Task 8232

Name 00353294_02_0
Workunit 4960
Created 20 Jan 2019, 18:17:24 UTC
Sent 20 Jan 2019, 18:18:53 UTC
Report deadline 21 Jan 2019, 2:18:53 UTC
Received 20 Jan 2019, 18:42:06 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 1
Run time 4 min 38 sec
CPU time 2 min 8 sec
Validate state Valid
Credit 1.81
Device peak FLOPS 2.81 GFLOPS
Application version boinc2docker v1.12 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 92.77 MB
Peak swap size 3.21 GB
Peak disk usage 213.24 MB

Stderr output

<core_client_version>7.6.33</core_client_version>
<![CDATA[
<stderr_txt>
2019-01-20 13:37:17 (16900): vboxwrapper (7.7.26197): starting
2019-01-20 13:37:18 (16900): Feature: Checkpoint interval offset (360 seconds)
2019-01-20 13:37:18 (16900): Detected: VirtualBox VboxManage Interface (Version: 5.1.8)
2019-01-20 13:37:18 (16900): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-01-20 13:37:18 (16900): Create VM. (boinc_0d6523f12eb862a9, slot#0)
2019-01-20 13:37:18 (16900): Updating drive controller type and model for desired configuration.
2019-01-20 13:37:19 (16900): Setting Memory Size for VM. (3072MB)
2019-01-20 13:37:19 (16900): Setting CPU Count for VM. (1)
2019-01-20 13:37:19 (16900): Setting Chipset Options for VM.
2019-01-20 13:37:19 (16900): Setting Boot Options for VM.
2019-01-20 13:37:19 (16900): Setting Network Configuration for NAT.
2019-01-20 13:37:19 (16900): Enabling VM Network Access.
2019-01-20 13:37:19 (16900): Disabling USB Support for VM.
2019-01-20 13:37:19 (16900): Disabling COM Port Support for VM.
2019-01-20 13:37:20 (16900): Disabling LPT Port Support for VM.
2019-01-20 13:37:20 (16900): Disabling Audio Support for VM.
2019-01-20 13:37:20 (16900): Disabling Clipboard Support for VM.
2019-01-20 13:37:20 (16900): Disabling Drag and Drop Support for VM.
2019-01-20 13:37:20 (16900): Adding storage controller(s) to VM.
2019-01-20 13:37:20 (16900): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-01-20 13:37:20 (16900): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-01-20 13:37:20 (16900): Enabling shared directory for VM.
2019-01-20 13:37:21 (16900): Starting VM. (boinc_0d6523f12eb862a9, slot#0)
2019-01-20 13:37:22 (16900): Successfully started VM. (PID = '17216')
2019-01-20 13:37:22 (16900): Reporting VM Process ID to BOINC.
2019-01-20 13:37:22 (16900): Guest Log: BIOS: VirtualBox 5.1.8
2019-01-20 13:37:23 (16900): VM state change detected. (old = 'poweroff', new = 'running')
2019-01-20 13:37:23 (16900): Preference change detected
2019-01-20 13:37:23 (16900): Setting CPU throttle for VM. (50%)
2019-01-20 13:37:23 (16900): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2019-01-20 13:37:25 (16900): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2019-01-20 13:37:25 (16900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2019-01-20 13:37:25 (16900): Guest Log: BIOS: Boot from Hard Disk 0 failed
2019-01-20 13:37:25 (16900): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2019-01-20 13:37:25 (16900): Guest Log: BIOS: Booting from CD-ROM...
2019-01-20 13:37:30 (16900): Guest Log: BIOS: KBD: unsupported int 16h function 03
2019-01-20 13:37:30 (16900): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2019-01-20 13:38:04 (16900): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2019-01-20 13:38:04 (16900): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2019-01-20 13:38:13 (16900): Guest Log: net.ipv4.ip_forward = 1
2019-01-20 13:38:13 (16900): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2019-01-20 13:38:13 (16900): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-01-20 13:38:13 (16900): Guest Log: sysctl: "cannot stat %s" is an unknown key
2019-01-20 13:38:13 (16900): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-01-20 13:38:13 (16900): Guest Log: Segmentation fault
2019-01-20 13:38:14 (16900): Guest Log: automount ...
2019-01-20 13:38:14 (16900): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2019-01-20 13:38:15 (16900): Guest Log: automount over.
2019-01-20 13:38:15 (16900): Guest Log: Setting hostname to boot2docker Done.
2019-01-20 13:38:16 (16900): Guest Log: Sun Jan 20 13:38:13 UTC 2019 dhcp -------------------------------
2019-01-20 13:38:21 (16900): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1289)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1290)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1292)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1293)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1294)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1295)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1296)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1297)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1298)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1299)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input7 (1300)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input7/event6 (1301)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1302)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1303)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1304)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1305)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1306)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1307)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1308)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1309)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1310)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1311)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1312)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1313)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1314)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1315)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1316)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1317)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1318)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1319)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1320)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1321)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1322)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1323)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1324)
2019-01-20 13:38:21 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1325)
2019-01-20 13:38:22 (16900): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1326)
2019-01-20 13:38:22 (16900): Guest Log: Sun Jan 20 13:38:19 UTC 2019 dhcp -------------------------------
2019-01-20 13:38:24 (16900): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-01-20 13:38:24 (16900): Guest Log: 00:00:00.001009 main     Log opened 2019-01-20T13:38:21.844707000Z
2019-01-20 13:38:24 (16900): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-01-20 13:38:24 (16900): Guest Log: 00:00:00.001009 main     Log opened 2019-01-20T13:38:21.844707000Z
2019-01-20 13:38:24 (16900): Guest Log: 00:00:00.007630 main     OS Product: Linux
2019-01-20 13:38:24 (16900): Guest Log: 00:00:00.007774 main     OS Release: 4.1.19-boot2docker
2019-01-20 13:38:24 (16900): Guest Log: 00:00:00.007893 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-01-20 13:38:24 (16900): Guest Log: 00:00:00.008027 main     Executable: /sbin/VBoxService
2019-01-20 13:38:24 (16900): Guest Log: 00:00:00.008041 main     Process ID: 750
2019-01-20 13:38:24 (16900): Guest Log: 00:00:00.008048 main     Package type: LINUX_64BITS_GENERIC
2019-01-20 13:38:24 (16900): Guest Log: 00:00:00.0076300:00:00.010219 main     5.0.16 r105871 started. Verbose level = 0
2019-01-20 13:38:24 (16900): Guest Log: 0 main     OS Product: Linux
2019-01-20 13:38:24 (16900): Guest Log: 00:00:00.007774 main     OS Release: 4.1.19-boot2docker
2019-01-20 13:38:24 (16900): Guest Log: 00:00:00.007893 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-01-20 13:38:24 (16900): Guest Log: 00:00:00.008027 main     Executable: /sbin/VBoxService
2019-01-20 13:38:24 (16900): Guest Log: 00:00:00.008041 main     Process ID: 750
2019-01-20 13:38:24 (16900): Guest Log: 00:00:00.110984 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2019-01-20 13:38:24 (16900): Guest Log: 00:00:00.111924 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2019-01-20 13:38:24 (16900): Guest Log: 00:00:00.008048 main     Package type: LINUX_64BITS_GENERIC
2019-01-20 13:38:24 (16900): Guest Log: 00:00:00.010219 main     5.0.16 r105871 started. Verbose level = 0
2019-01-20 13:38:25 (16900): Guest Log: Mounting BOINC shared/...
2019-01-20 13:38:25 (16900): Guest Log: -------------------
2019-01-20 13:38:25 (16900): Guest Log: Sun Jan 20 18:38:25 UTC 2019
2019-01-20 13:38:29 (16900): Guest Log: 00:00:05.126574 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2019-01-20 13:38:31 (16900): Guest Log: Sun Jan 20 18:38:30 UTC 2019
2019-01-20 13:38:31 (16900): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2019-01-20 13:38:31 (16900): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2019-01-20 13:38:31 (16900): Guest Log:     inet 127.0.0.1/8 scope host lo
2019-01-20 13:38:31 (16900): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2019-01-20 13:38:31 (16900): Guest Log:     link/ether 86:26:8b:63:42:ba brd ff:ff:ff:ff:ff:ff
2019-01-20 13:38:31 (16900): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2019-01-20 13:38:31 (16900): Guest Log:     link/ether 08:00:27:0d:2d:62 brd ff:ff:ff:ff:ff:ff
2019-01-20 13:38:31 (16900): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2019-01-20 13:38:31 (16900): Guest Log:        valid_lft forever preferred_lft forever
2019-01-20 13:38:31 (16900): Guest Log: -------------------
2019-01-20 13:38:31 (16900): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2019-01-20 13:38:31 (16900): Guest Log: Waiting for Docker daemon to start...
2019-01-20 13:38:34 (16900): Guest Log: 00:00:10.129000 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2019-01-20 13:38:36 (16900): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-01-20 13:38:36 (16900): Guest Log: Running boinc_app...
2019-01-20 13:38:36 (16900): Guest Log: Importing Docker image from BOINC...
2019-01-20 13:38:36 (16900): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2019-01-20 13:38:36 (16900): Guest Log: tmpfs                     2.6G    164.1M      2.5G   6% /
2019-01-20 13:38:36 (16900): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2019-01-20 13:38:36 (16900): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2019-01-20 13:38:36 (16900): Guest Log: shared                  110.6G     67.4G     43.2G  61% /root/shared
2019-01-20 13:38:36 (16900): Guest Log: tmpfs                     2.6G    164.1M      2.5G   6% /var/lib/docker/aufs
2019-01-20 13:39:15 (16900): Guest Log: doing docker load...
2019-01-20 13:40:52 (16900): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2019-01-20 13:40:52 (16900): Guest Log: tmpfs                     2.6G    619.1M      2.0G  23% /
2019-01-20 13:40:52 (16900): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2019-01-20 13:40:52 (16900): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2019-01-20 13:40:52 (16900): Guest Log: shared                  110.6G     67.3G     43.4G  61% /root/shared
2019-01-20 13:40:52 (16900): Guest Log: tmpfs                     2.6G    619.1M      2.0G  23% /var/lib/docker/aufs
2019-01-20 13:40:52 (16900): Guest Log:               total        used        free      shared  buff/cache   available
2019-01-20 13:40:52 (16900): Guest Log: Mem:           3007          50        2301         619         655        2301
2019-01-20 13:40:52 (16900): Guest Log: Swap:           702           0         702
2019-01-20 13:40:52 (16900): Guest Log: Building apps directory...
2019-01-20 13:41:01 (16900): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2019-01-20 13:41:19 (16900): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077_links.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2019-01-20 13:41:19 (16900): Guest Log: mv /root/shared/appsSource/rappture /root/shared/apps/share64/debian7/environ.d
2019-01-20 13:41:19 (16900): Guest Log: Prerun diagnostics...
2019-01-20 13:41:19 (16900): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-01-20 13:41:19 (16900): Guest Log: nanohub_apps_base   11                  a3831bfe0ebe        14 months ago       445.4 MB
2019-01-20 13:41:20 (16900): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2019-01-20 13:41:20 (16900): Guest Log: 455.0M	/var/lib/docker
2019-01-20 13:41:20 (16900): Guest Log:               total        used        free      shared  buff/cache   available
2019-01-20 13:41:20 (16900): Guest Log: Mem:           3007          50        2299         619         657        2300
2019-01-20 13:41:20 (16900): Guest Log: Swap:           702           0         702
2019-01-20 13:41:20 (16900): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2019-01-20 13:41:20 (16900): Guest Log: tmpfs                     2.6G    619.1M      2.0G  23% /
2019-01-20 13:41:20 (16900): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2019-01-20 13:41:20 (16900): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2019-01-20 13:41:20 (16900): Guest Log: shared                  110.6G     67.3G     43.3G  61% /root/shared
2019-01-20 13:41:20 (16900): Guest Log: tmpfs                     2.6G    619.1M      2.0G  23% /var/lib/docker/aufs
2019-01-20 13:41:20 (16900): Guest Log: Running... 
2019-01-20 13:41:22 (16900): Guest Log: 00353294_02.boinc
2019-01-20 13:41:22 (16900): Guest Log: 00353294_02.sh
2019-01-20 13:41:46 (16900): Guest Log: boinc_app exited (0)
2019-01-20 13:41:46 (16900): Guest Log: Saving results...
2019-01-20 13:41:46 (16900): Guest Log: 00353294_02_output.tar.gz
2019-01-20 13:41:46 (16900): VM Completion File Detected.
2019-01-20 13:41:46 (16900): Powering off VM.
2019-01-20 13:41:47 (16900): Successfully stopped VM.
2019-01-20 13:41:47 (16900): Deregistering VM. (boinc_0d6523f12eb862a9, slot#0)
2019-01-20 13:41:47 (16900): Removing network bandwidth throttle group from VM.
2019-01-20 13:41:47 (16900): Removing storage controller(s) from VM.
2019-01-20 13:41:47 (16900): Removing VM from VirtualBox.
2019-01-20 13:41:48 (16900): Removing virtual ISO 9660 disk from VirtualBox.
13:41:53 (16900): called boinc_finish(0)

</stderr_txt>
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