Task 8493

Name 00357016_01_0
Workunit 5189
Created 17 Apr 2019, 5:01:52 UTC
Sent 17 Apr 2019, 5:14:24 UTC
Report deadline 17 Apr 2019, 13:14:24 UTC
Received 17 Apr 2019, 5:16:55 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 5
Run time 2 min 11 sec
CPU time 1 min 9 sec
Validate state Valid
Credit 1.44
Device peak FLOPS 2.24 GFLOPS
Application version boinc2docker v1.12 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 93.28 MB
Peak swap size 3.00 GB
Peak disk usage 213.24 MB

Stderr output

<core_client_version>7.4.23</core_client_version>
<![CDATA[
<stderr_txt>
2019-04-17 01:14:34 (21643): vboxwrapper (7.7.26197): starting
2019-04-17 01:14:35 (21643): Feature: Checkpoint interval offset (535 seconds)
2019-04-17 01:14:35 (21643): Detected: VirtualBox VboxManage Interface (Version: 5.1.8)
2019-04-17 01:14:35 (21643): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-04-17 01:14:35 (21643): Create VM. (boinc_40c6b9af8894d7ae, slot#2)
2019-04-17 01:14:35 (21643): Updating drive controller type and model for desired configuration.
2019-04-17 01:14:40 (21643): Setting Memory Size for VM. (3072MB)
2019-04-17 01:14:40 (21643): Setting CPU Count for VM. (1)
2019-04-17 01:14:40 (21643): Setting Chipset Options for VM.
2019-04-17 01:14:40 (21643): Setting Boot Options for VM.
2019-04-17 01:14:41 (21643): Setting Network Configuration for NAT.
2019-04-17 01:14:41 (21643): Enabling VM Network Access.
2019-04-17 01:14:41 (21643): Disabling USB Support for VM.
2019-04-17 01:14:41 (21643): Disabling COM Port Support for VM.
2019-04-17 01:14:41 (21643): Disabling LPT Port Support for VM.
2019-04-17 01:14:41 (21643): Disabling Audio Support for VM.
2019-04-17 01:14:41 (21643): Disabling Clipboard Support for VM.
2019-04-17 01:14:41 (21643): Disabling Drag and Drop Support for VM.
2019-04-17 01:14:41 (21643): Adding storage controller(s) to VM.
2019-04-17 01:14:41 (21643): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-04-17 01:14:42 (21643): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-04-17 01:14:42 (21643): Enabling shared directory for VM.
2019-04-17 01:14:42 (21643): Starting VM. (boinc_40c6b9af8894d7ae, slot#2)
2019-04-17 01:14:43 (21643): Successfully started VM. (PID = '22406')
2019-04-17 01:14:43 (21643): Reporting VM Process ID to BOINC.
2019-04-17 01:14:43 (21643): Guest Log: BIOS: VirtualBox 5.1.8
2019-04-17 01:14:44 (21643): VM state change detected. (old = 'poweroff', new = 'running')
2019-04-17 01:14:44 (21643): Preference change detected
2019-04-17 01:14:44 (21643): Setting CPU throttle for VM. (75%)
2019-04-17 01:14:44 (21643): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2019-04-17 01:14:46 (21643): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2019-04-17 01:14:46 (21643): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2019-04-17 01:14:46 (21643): Guest Log: BIOS: Boot from Hard Disk 0 failed
2019-04-17 01:14:46 (21643): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2019-04-17 01:14:46 (21643): Guest Log: BIOS: Booting from CD-ROM...
2019-04-17 01:14:48 (21643): Guest Log: BIOS: KBD: unsupported int 16h function 03
2019-04-17 01:14:48 (21643): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2019-04-17 01:15:08 (21643): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2019-04-17 01:15:08 (21643): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2019-04-17 01:15:11 (21643): Guest Log: net.ipv4.ip_forward = 1
2019-04-17 01:15:11 (21643): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2019-04-17 01:15:11 (21643): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-04-17 01:15:11 (21643): Guest Log: sysctl: "cannot stat %s" is an unknown key
2019-04-17 01:15:11 (21643): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-04-17 01:15:11 (21643): Guest Log: Segmentation fault
2019-04-17 01:15:11 (21643): Guest Log: automount ...
2019-04-17 01:15:16 (21643): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2019-04-17 01:15:16 (21643): Guest Log: automount over.
2019-04-17 01:15:16 (21643): Guest Log: Setting hostname to boot2docker Done.
2019-04-17 01:15:16 (21643): Guest Log: Wed Apr 17 01:15:14 UTC 2019 dhcp -------------------------------
2019-04-17 01:15:21 (21643): Guest Log: Wed Apr 17 01:15:18 UTC 2019 dhcp -------------------------------
2019-04-17 01:15:21 (21643): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-04-17 01:15:21 (21643): Guest Log: 00:00:00.000700 main     Log opened 2019-04-17T01:15:19.182382000Z
2019-04-17 01:15:21 (21643): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-04-17 01:15:21 (21643): Guest Log: 00:00:00.000700 main     Log opened 2019-04-17T01:15:19.182382000Z
2019-04-17 01:15:21 (21643): Guest Log: 00:00:00.006508 main     OS Product: Linux
2019-04-17 01:15:21 (21643): Guest Log: 00:00:00.006580 main     OS Release: 4.1.19-boot2docker
2019-04-17 01:15:21 (21643): Guest Log: 00:00:00.006643 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-04-17 01:15:21 (21643): Guest Log: 00:00:00.006699 main     Executable: /sbin/VBoxService
2019-04-17 01:15:21 (21643): Guest Log: 00:00:00.006701 main     Process ID: 744
2019-04-17 01:15:21 (21643): Guest Log: 00:00:00.006702 main     Package type: LINUX_64BITS_GENERIC
2019-04-17 01:15:21 (21643): Guest Log: 00:00:00.00600:00:00.008139 main     5.0.16 r105871 started. Verbose level = 0
2019-04-17 01:15:21 (21643): Guest Log: 508 main     OS Product: Linux
2019-04-17 01:15:21 (21643): Guest Log: 00:00:00.006580 main     OS Release: 4.1.19-boot2docker
2019-04-17 01:15:21 (21643): Guest Log: 00:00:00.006643 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-04-17 01:15:21 (21643): Guest Log: 00:00:00.006699 main     Executable: /sbin/VBoxService
2019-04-17 01:15:21 (21643): Guest Log: 00:00:00.006701 main     Process ID: 744
2019-04-17 01:15:21 (21643): Guest Log: 00:00:00:00.039539 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2019-04-17 01:15:21 (21643): Guest Log: 00:00:00.039725 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2019-04-17 01:15:21 (21643): Guest Log: 00:00.006702 main     Package type: LINUX_64BITS_GENERIC
2019-04-17 01:15:21 (21643): Guest Log: 00:00:00.008139 main     5.0.16 r105871 started. Verbose level = 0
2019-04-17 01:15:22 (21643): Guest Log: Mounting BOINC shared/...
2019-04-17 01:15:22 (21643): Guest Log: -------------------
2019-04-17 01:15:22 (21643): Guest Log: Wed Apr 17 05:15:22 UTC 2019
2019-04-17 01:15:26 (21643): Guest Log: 00:00:05.060931 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2019-04-17 01:15:27 (21643): Guest Log: Wed Apr 17 05:15:27 UTC 2019
2019-04-17 01:15:27 (21643): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2019-04-17 01:15:27 (21643): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2019-04-17 01:15:27 (21643): Guest Log:     inet 127.0.0.1/8 scope host lo
2019-04-17 01:15:27 (21643): Guest Log:        valid_lft forever preferred_lft forever
2019-04-17 01:15:27 (21643): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2019-04-17 01:15:27 (21643): Guest Log:     link/ether 9e:1d:7a:5d:9e:dd brd ff:ff:ff:ff:ff:ff
2019-04-17 01:15:27 (21643): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2019-04-17 01:15:27 (21643): Guest Log:     link/ether 08:00:27:5e:78:29 brd ff:ff:ff:ff:ff:ff
2019-04-17 01:15:27 (21643): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2019-04-17 01:15:27 (21643): Guest Log:        valid_lft forever preferred_lft forever
2019-04-17 01:15:27 (21643): Guest Log: -------------------
2019-04-17 01:15:27 (21643): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2019-04-17 01:15:27 (21643): Guest Log: Waiting for Docker daemon to start...
2019-04-17 01:15:30 (21643): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-04-17 01:15:30 (21643): Guest Log: Running boinc_app...
2019-04-17 01:15:30 (21643): Guest Log: Importing Docker image from BOINC...
2019-04-17 01:15:30 (21643): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2019-04-17 01:15:30 (21643): Guest Log: tmpfs                     2.6G    164.1M      2.5G   6% /
2019-04-17 01:15:30 (21643): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2019-04-17 01:15:30 (21643): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2019-04-17 01:15:30 (21643): Guest Log: shared                  916.3G     77.2G    839.1G   8% /root/shared
2019-04-17 01:15:30 (21643): Guest Log: tmpfs                     2.6G    164.1M      2.5G   6% /var/lib/docker/aufs
2019-04-17 01:15:31 (21643): Guest Log: 00:00:10.107323 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2019-04-17 01:15:46 (21643): Guest Log: doing docker load...
2019-04-17 01:16:09 (21643): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2019-04-17 01:16:09 (21643): Guest Log: tmpfs                     2.6G    619.1M      2.0G  23% /
2019-04-17 01:16:09 (21643): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2019-04-17 01:16:09 (21643): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2019-04-17 01:16:09 (21643): Guest Log: shared                  916.3G     77.7G    838.5G   8% /root/shared
2019-04-17 01:16:09 (21643): Guest Log: tmpfs                     2.6G    619.1M      2.0G  23% /var/lib/docker/aufs
2019-04-17 01:16:09 (21643): Guest Log:               total        used        free      shared  buff/cache   available
2019-04-17 01:16:09 (21643): Guest Log: Mem:           3007          50        2301         619         655        2301
2019-04-17 01:16:09 (21643): Guest Log: Swap:           702           0         702
2019-04-17 01:16:09 (21643): Guest Log: Building apps directory...
2019-04-17 01:16:14 (21643): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2019-04-17 01:16:22 (21643): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077_links.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2019-04-17 01:16:22 (21643): Guest Log: mv /root/shared/appsSource/rappture /root/shared/apps/share64/debian7/environ.d
2019-04-17 01:16:22 (21643): Guest Log: Prerun diagnostics...
2019-04-17 01:16:22 (21643): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-04-17 01:16:22 (21643): Guest Log: nanohub_apps_base   11                  a3831bfe0ebe        17 months ago       445.4 MB
2019-04-17 01:16:22 (21643): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2019-04-17 01:16:23 (21643): Guest Log: 455.0M	/var/lib/docker
2019-04-17 01:16:23 (21643): Guest Log:               total        used        free      shared  buff/cache   available
2019-04-17 01:16:23 (21643): Guest Log: Mem:           3007          50        2299         619         657        2300
2019-04-17 01:16:23 (21643): Guest Log: Swap:           702           0         702
2019-04-17 01:16:23 (21643): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2019-04-17 01:16:23 (21643): Guest Log: tmpfs                     2.6G    619.1M      2.0G  23% /
2019-04-17 01:16:23 (21643): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2019-04-17 01:16:23 (21643): Guest Log: shared                  916.3G     78.2G    838.1G   9% /root/shared
2019-04-17 01:16:23 (21643): Guest Log: tmpfs                     2.6G    619.1M      2.0G  23% /var/lib/docker/aufs
2019-04-17 01:16:23 (21643): Guest Log: Running... 
2019-04-17 01:16:23 (21643): Guest Log: 00357016_01.boinc
2019-04-17 01:16:24 (21643): Guest Log: 00357016_01.sh
2019-04-17 01:16:34 (21643): Guest Log: boinc_app exited (0)
2019-04-17 01:16:34 (21643): Guest Log: Saving results...
2019-04-17 01:16:34 (21643): Guest Log: 00357016_01_output.tar.gz
2019-04-17 01:16:34 (21643): VM Completion File Detected.
2019-04-17 01:16:34 (21643): Powering off VM.
2019-04-17 01:16:37 (21643): Status Report: virtualbox/vboxheadless is no longer running.
2019-04-17 01:16:37 (21643): Successfully stopped VM.
2019-04-17 01:16:37 (21643): Deregistering VM. (boinc_40c6b9af8894d7ae, slot#2)
2019-04-17 01:16:37 (21643): Removing network bandwidth throttle group from VM.
2019-04-17 01:16:38 (21643): Removing storage controller(s) from VM.
2019-04-17 01:16:38 (21643): Removing VM from VirtualBox.
2019-04-17 01:16:39 (21643): Removing virtual ISO 9660 disk from VirtualBox.
01:16:44 (21643): called boinc_finish(0)

</stderr_txt>
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