Task 8341

Name 00355434_01_0
Workunit 5069
Created 15 Mar 2019, 5:41:20 UTC
Sent 15 Mar 2019, 11:16:54 UTC
Report deadline 15 Mar 2019, 19:16:54 UTC
Received 15 Mar 2019, 11:24:11 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 6
Run time 1 min 59 sec
CPU time 1 min 3 sec
Validate state Valid
Credit 1.30
Device peak FLOPS 2.23 GFLOPS
Application version boinc2docker v1.12 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 93.55 MB
Peak swap size 3.00 GB
Peak disk usage 213.33 MB

Stderr output

<core_client_version>7.4.23</core_client_version>
<![CDATA[
<stderr_txt>
2019-03-15 07:21:58 (30186): vboxwrapper (7.7.26197): starting
2019-03-15 07:21:58 (30186): Feature: Checkpoint interval offset (318 seconds)
2019-03-15 07:21:58 (30186): Detected: VirtualBox VboxManage Interface (Version: 5.1.8)
2019-03-15 07:21:58 (30186): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-03-15 07:21:58 (30186): Create VM. (boinc_7bb68eefb971c44d, slot#4)
2019-03-15 07:21:58 (30186): Updating drive controller type and model for desired configuration.
2019-03-15 07:21:58 (30186): Setting Memory Size for VM. (3072MB)
2019-03-15 07:21:59 (30186): Setting CPU Count for VM. (1)
2019-03-15 07:21:59 (30186): Setting Chipset Options for VM.
2019-03-15 07:21:59 (30186): Setting Boot Options for VM.
2019-03-15 07:21:59 (30186): Setting Network Configuration for NAT.
2019-03-15 07:21:59 (30186): Enabling VM Network Access.
2019-03-15 07:21:59 (30186): Disabling USB Support for VM.
2019-03-15 07:21:59 (30186): Disabling COM Port Support for VM.
2019-03-15 07:21:59 (30186): Disabling LPT Port Support for VM.
2019-03-15 07:21:59 (30186): Disabling Audio Support for VM.
2019-03-15 07:21:59 (30186): Disabling Clipboard Support for VM.
2019-03-15 07:21:59 (30186): Disabling Drag and Drop Support for VM.
2019-03-15 07:21:59 (30186): Adding storage controller(s) to VM.
2019-03-15 07:21:59 (30186): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-03-15 07:21:59 (30186): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-03-15 07:22:00 (30186): Enabling shared directory for VM.
2019-03-15 07:22:00 (30186): Starting VM. (boinc_7bb68eefb971c44d, slot#4)
2019-03-15 07:22:01 (30186): Successfully started VM. (PID = '31426')
2019-03-15 07:22:01 (30186): Reporting VM Process ID to BOINC.
2019-03-15 07:22:01 (30186): Guest Log: BIOS: VirtualBox 5.1.8
2019-03-15 07:22:01 (30186): VM state change detected. (old = 'poweroff', new = 'running')
2019-03-15 07:22:01 (30186): Preference change detected
2019-03-15 07:22:01 (30186): Setting CPU throttle for VM. (75%)
2019-03-15 07:22:01 (30186): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2019-03-15 07:22:03 (30186): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2019-03-15 07:22:03 (30186): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2019-03-15 07:22:03 (30186): Guest Log: BIOS: Boot from Hard Disk 0 failed
2019-03-15 07:22:03 (30186): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2019-03-15 07:22:03 (30186): Guest Log: BIOS: Booting from CD-ROM...
2019-03-15 07:22:06 (30186): Guest Log: BIOS: KBD: unsupported int 16h function 03
2019-03-15 07:22:06 (30186): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2019-03-15 07:22:26 (30186): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2019-03-15 07:22:26 (30186): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2019-03-15 07:22:27 (30186): Guest Log: net.ipv4.ip_forward = 1
2019-03-15 07:22:27 (30186): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2019-03-15 07:22:27 (30186): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-03-15 07:22:27 (30186): Guest Log: sysctl: "cannot stat %s" is an unknown key
2019-03-15 07:22:27 (30186): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-03-15 07:22:27 (30186): Guest Log: Segmentation fault
2019-03-15 07:22:28 (30186): Guest Log: automount ...
2019-03-15 07:22:28 (30186): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2019-03-15 07:22:28 (30186): Guest Log: automount over.
2019-03-15 07:22:28 (30186): Guest Log: Setting hostname to boot2docker Done.
2019-03-15 07:22:28 (30186): Guest Log: Fri Mar 15 07:22:26 UTC 2019 dhcp -------------------------------
2019-03-15 07:22:34 (30186): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2019-03-15 07:22:34 (30186): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1289)
2019-03-15 07:22:34 (30186): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1290)
2019-03-15 07:22:34 (30186): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6 (1297)
2019-03-15 07:22:34 (30186): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6/event5 (1298)
2019-03-15 07:22:34 (30186): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1299)
2019-03-15 07:22:34 (30186): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1300)
2019-03-15 07:22:34 (30186): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1301)
2019-03-15 07:22:34 (30186): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1302)
2019-03-15 07:22:34 (30186): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1303)
2019-03-15 07:22:34 (30186): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1304)
2019-03-15 07:22:34 (30186): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1305)
2019-03-15 07:22:34 (30186): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1306)
2019-03-15 07:22:34 (30186): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1307)
2019-03-15 07:22:34 (30186): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1309)
2019-03-15 07:22:34 (30186): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1310)
2019-03-15 07:22:34 (30186): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1311)
2019-03-15 07:22:34 (30186): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1312)
2019-03-15 07:22:34 (30186): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1313)
2019-03-15 07:22:34 (30186): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1314)
2019-03-15 07:22:34 (30186): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1315)
2019-03-15 07:22:34 (30186): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1316)
2019-03-15 07:22:34 (30186): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1320)
2019-03-15 07:22:34 (30186): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1322)
2019-03-15 07:22:35 (30186): Guest Log: Fri Mar 15 07:22:32 UTC 2019 dhcp -------------------------------
2019-03-15 07:22:36 (30186): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-03-15 07:22:36 (30186): Guest Log: 00:00:00.000647 main     Log opened 2019-03-15T07:22:33.472537000Z
2019-03-15 07:22:36 (30186): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-03-15 07:22:36 (30186): Guest Log: 00:00:00.000647 main     Log opened 2019-03-15T07:22:33.472537000Z
2019-03-15 07:22:36 (30186): Guest Log: 00:00:00.006813 main     OS Product: Linux
2019-03-15 07:22:36 (30186): Guest Log: 00:00:00.006875 main     OS Release: 4.1.19-boot2docker
2019-03-15 07:22:36 (30186): Guest Log: 00:00:00.006933 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-03-15 07:22:36 (30186): Guest Log: 00:00:00.006988 main     Executable: /sbin/VBoxService
2019-03-15 07:22:36 (30186): Guest Log: 00:00:00.006990 main     Process ID: 771
2019-03-15 07:22:36 (30186): Guest Log: 00:00:00.006991 main     Package type: LINUX_64BITS_GENERIC
2019-03-15 07:22:36 (30186): Guest Log: 00:00:00.006813 main     OS Product: Linux
2019-03-15 07:22:36 (30186): Guest Log: 00:00:00.006875 main     OS Release: 4.1.19-boot2docker
2019-03-15 07:22:36 (30186): Guest Log: 00:00:00.006933 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-03-15 07:22:36 (30186): Guest Log: 00:00:00.006988 main     Executable: /sbin/VBoxService
2019-03-15 07:22:36 (30186): Guest Log: 00:00:00.006990 main     Process ID: 771
2019-03-15 07:22:36 (30186): Guest Log: 00:00:00.006991 main     Package type: LINUX_64BITS_GENERIC
2019-03-15 07:22:36 (30186): Guest Log: 00:00:00.051770 main     5.0.16 r105871 started. Verbose level = 0
2019-03-15 07:22:36 (30186): Guest Log: 00:00:00.051770 main     5.0.16 r105871 started. Verbose level = 0
2019-03-15 07:22:36 (30186): Guest Log: 00:00:00.081122 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2019-03-15 07:22:36 (30186): Guest Log: 00:00:00.081289 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2019-03-15 07:22:36 (30186): Guest Log: Mounting BOINC shared/...
2019-03-15 07:22:36 (30186): Guest Log: -------------------
2019-03-15 07:22:36 (30186): Guest Log: Fri Mar 15 11:22:36 UTC 2019
2019-03-15 07:22:41 (30186): Guest Log: 00:00:05.103318 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2019-03-15 07:22:41 (30186): Guest Log: Fri Mar 15 11:22:41 UTC 2019
2019-03-15 07:22:41 (30186): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2019-03-15 07:22:41 (30186): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2019-03-15 07:22:41 (30186): Guest Log:     inet 127.0.0.1/8 scope host lo
2019-03-15 07:22:41 (30186): Guest Log:        valid_lft forever preferred_lft forever
2019-03-15 07:22:41 (30186): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2019-03-15 07:22:41 (30186): Guest Log:     link/ether 76:3b:3a:a2:ec:66 brd ff:ff:ff:ff:ff:ff
2019-03-15 07:22:41 (30186): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2019-03-15 07:22:41 (30186): Guest Log:     link/ether 08:00:27:a7:ec:fb brd ff:ff:ff:ff:ff:ff
2019-03-15 07:22:41 (30186): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2019-03-15 07:22:41 (30186): Guest Log:        valid_lft forever preferred_lft forever
2019-03-15 07:22:41 (30186): Guest Log: -------------------
2019-03-15 07:22:41 (30186): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2019-03-15 07:22:42 (30186): Guest Log: Waiting for Docker daemon to start...
2019-03-15 07:22:44 (30186): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-03-15 07:22:44 (30186): Guest Log: Running boinc_app...
2019-03-15 07:22:44 (30186): Guest Log: Importing Docker image from BOINC...
2019-03-15 07:22:44 (30186): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2019-03-15 07:22:44 (30186): Guest Log: tmpfs                     2.6G    164.1M      2.5G   6% /
2019-03-15 07:22:44 (30186): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2019-03-15 07:22:44 (30186): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2019-03-15 07:22:44 (30186): Guest Log: shared                  916.3G     74.9G    841.3G   8% /root/shared
2019-03-15 07:22:44 (30186): Guest Log: tmpfs                     2.6G    164.1M      2.5G   6% /var/lib/docker/aufs
2019-03-15 07:22:46 (30186): Guest Log: 00:00:10.124395 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2019-03-15 07:23:00 (30186): Guest Log: doing docker load...
2019-03-15 07:23:22 (30186): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2019-03-15 07:23:22 (30186): Guest Log: tmpfs                     2.6G    619.1M      2.0G  23% /
2019-03-15 07:23:22 (30186): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2019-03-15 07:23:22 (30186): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2019-03-15 07:23:22 (30186): Guest Log: shared                  916.3G     74.5G    841.7G   8% /root/shared
2019-03-15 07:23:22 (30186): Guest Log: tmpfs                     2.6G    619.1M      2.0G  23% /var/lib/docker/aufs
2019-03-15 07:23:22 (30186): Guest Log:               total        used        free      shared  buff/cache   available
2019-03-15 07:23:22 (30186): Guest Log: Mem:           3007          50        2300         619         655        2300
2019-03-15 07:23:22 (30186): Guest Log: Swap:           701           0         701
2019-03-15 07:23:22 (30186): Guest Log: Building apps directory...
2019-03-15 07:23:26 (30186): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2019-03-15 07:23:34 (30186): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077_links.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2019-03-15 07:23:35 (30186): Guest Log: mv /root/shared/appsSource/rappture /root/shared/apps/share64/debian7/environ.d
2019-03-15 07:23:36 (30186): Guest Log: Prerun diagnostics...
2019-03-15 07:23:36 (30186): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-03-15 07:23:36 (30186): Guest Log: nanohub_apps_base   11                  a3831bfe0ebe        16 months ago       445.4 MB
2019-03-15 07:23:36 (30186): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2019-03-15 07:23:36 (30186): Guest Log: 455.0M	/var/lib/docker
2019-03-15 07:23:36 (30186): Guest Log:               total        used        free      shared  buff/cache   available
2019-03-15 07:23:36 (30186): Guest Log: Mem:           3007          50        2299         619         657        2300
2019-03-15 07:23:36 (30186): Guest Log: Swap:           701           0         701
2019-03-15 07:23:36 (30186): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2019-03-15 07:23:36 (30186): Guest Log: tmpfs                     2.6G    619.1M      2.0G  23% /
2019-03-15 07:23:36 (30186): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2019-03-15 07:23:36 (30186): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2019-03-15 07:23:36 (30186): Guest Log: shared                  916.3G     74.9G    841.4G   8% /root/shared
2019-03-15 07:23:36 (30186): Guest Log: tmpfs                     2.6G    619.1M      2.0G  23% /var/lib/docker/aufs
2019-03-15 07:23:36 (30186): Guest Log: Running... 
2019-03-15 07:23:37 (30186): Guest Log: 00355434_01.boinc
2019-03-15 07:23:37 (30186): Guest Log: 00355434_01.sh
2019-03-15 07:23:50 (30186): Guest Log: boinc_app exited (0)
2019-03-15 07:23:50 (30186): Guest Log: Saving results...
2019-03-15 07:23:50 (30186): Guest Log: 00355434_01_output.tar.gz
2019-03-15 07:23:50 (30186): VM Completion File Detected.
2019-03-15 07:23:50 (30186): Powering off VM.
2019-03-15 07:23:50 (30186): Successfully stopped VM.
2019-03-15 07:23:50 (30186): Deregistering VM. (boinc_7bb68eefb971c44d, slot#4)
2019-03-15 07:23:50 (30186): Removing network bandwidth throttle group from VM.
2019-03-15 07:23:50 (30186): Removing storage controller(s) from VM.
2019-03-15 07:23:50 (30186): Removing VM from VirtualBox.
2019-03-15 07:23:50 (30186): Removing virtual ISO 9660 disk from VirtualBox.
07:23:56 (30186): called boinc_finish(0)

</stderr_txt>
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