Task 7442
| Name | 00335691_01_1 |
| Workunit | 4263 |
| Created | 22 Nov 2017, 8:40:28 UTC |
| Sent | 22 Nov 2017, 8:46:05 UTC |
| Report deadline | 22 Nov 2017, 16:46:05 UTC |
| Received | 22 Nov 2017, 8:50:44 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 13 |
| Run time | 4 min 18 sec |
| CPU time | 2 min 6 sec |
| Validate state | Valid |
| Credit | 1.33 |
| Device peak FLOPS | 2.47 GFLOPS |
| Application version | boinc2docker v1.11 (vbox64_mt) x86_64-pc-linux-gnu |
| Peak working set size | 94.43 MB |
| Peak swap size | 3.41 GB |
| Peak disk usage | 485.86 MB |
Stderr output
<core_client_version>7.4.23</core_client_version>
<![CDATA[
<stderr_txt>
2017-11-22 03:43:59 (48376): vboxwrapper (7.7.26197): starting
2017-11-22 03:44:00 (48376): Feature: Checkpoint interval offset (574 seconds)
2017-11-22 03:44:00 (48376): Detected: VirtualBox VboxManage Interface (Version: 5.1.8)
2017-11-22 03:44:00 (48376): Detected: Minimum checkpoint interval (600.000000 seconds)
2017-11-22 03:44:00 (48376): Create VM. (boinc_e3a951d392fa064e, slot#3)
2017-11-22 03:44:00 (48376): Updating drive controller type and model for desired configuration.
2017-11-22 03:44:00 (48376): Setting Memory Size for VM. (3072MB)
2017-11-22 03:44:00 (48376): Setting CPU Count for VM. (1)
2017-11-22 03:44:01 (48376): Setting Chipset Options for VM.
2017-11-22 03:44:01 (48376): Setting Boot Options for VM.
2017-11-22 03:44:01 (48376): Setting Network Configuration for NAT.
2017-11-22 03:44:01 (48376): Enabling VM Network Access.
2017-11-22 03:44:01 (48376): Disabling USB Support for VM.
2017-11-22 03:44:01 (48376): Disabling COM Port Support for VM.
2017-11-22 03:44:01 (48376): Disabling LPT Port Support for VM.
2017-11-22 03:44:01 (48376): Disabling Audio Support for VM.
2017-11-22 03:44:01 (48376): Disabling Clipboard Support for VM.
2017-11-22 03:44:01 (48376): Disabling Drag and Drop Support for VM.
2017-11-22 03:44:02 (48376): Adding storage controller(s) to VM.
2017-11-22 03:44:02 (48376): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2017-11-22 03:44:02 (48376): Adding VirtualBox Guest Additions to VM.
2017-11-22 03:44:02 (48376): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2017-11-22 03:44:02 (48376): Enabling shared directory for VM.
2017-11-22 03:44:02 (48376): Starting VM. (boinc_e3a951d392fa064e, slot#3)
2017-11-22 03:44:04 (48376): Successfully started VM. (PID = '48713')
2017-11-22 03:44:04 (48376): Reporting VM Process ID to BOINC.
2017-11-22 03:44:04 (48376): Guest Log: BIOS: VirtualBox 5.1.8
2017-11-22 03:44:04 (48376): VM state change detected. (old = 'poweroff', new = 'running')
2017-11-22 03:44:04 (48376): Preference change detected
2017-11-22 03:44:04 (48376): Setting CPU throttle for VM. (50%)
2017-11-22 03:44:04 (48376): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2017-11-22 03:44:06 (48376): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2017-11-22 03:44:06 (48376): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2017-11-22 03:44:06 (48376): Guest Log: BIOS: Boot from Hard Disk 0 failed
2017-11-22 03:44:06 (48376): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2017-11-22 03:44:06 (48376): Guest Log: BIOS: Booting from CD-ROM...
2017-11-22 03:44:08 (48376): Guest Log: BIOS: KBD: unsupported int 16h function 03
2017-11-22 03:44:08 (48376): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000
2017-11-22 03:44:28 (48376): Guest Log: net.ipv4.ip_forward = 1
2017-11-22 03:44:28 (48376): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2017-11-22 03:44:28 (48376): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2017-11-22 03:44:28 (48376): Guest Log: sysctl: "cannot stat %s" is an unknown key
2017-11-22 03:44:28 (48376): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2017-11-22 03:44:28 (48376): Guest Log: Segmentation fault
2017-11-22 03:44:29 (48376): Guest Log: automount ...
2017-11-22 03:44:29 (48376): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2017-11-22 03:44:29 (48376): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2017-11-22 03:44:29 (48376): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2017-11-22 03:44:29 (48376): Guest Log: automount over.
2017-11-22 03:44:29 (48376): Guest Log: [1;32mSetting hostname to [1;35mboot2docker[0;39m [1;32mDone.[0;39m
2017-11-22 03:44:29 (48376): Guest Log: Wed Nov 22 03:44:26 UTC 2017 dhcp -------------------------------
2017-11-22 03:44:35 (48376): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2017-11-22 03:44:35 (48376): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6 (1304)
2017-11-22 03:44:35 (48376): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6/event5 (1305)
2017-11-22 03:44:35 (48376): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1307)
2017-11-22 03:44:35 (48376): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1308)
2017-11-22 03:44:35 (48376): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1309)
2017-11-22 03:44:35 (48376): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1310)
2017-11-22 03:44:35 (48376): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1311)
2017-11-22 03:44:35 (48376): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1312)
2017-11-22 03:44:35 (48376): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1313)
2017-11-22 03:44:35 (48376): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1314)
2017-11-22 03:44:35 (48376): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1316)
2017-11-22 03:44:35 (48376): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1317)
2017-11-22 03:44:35 (48376): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1320)
2017-11-22 03:44:35 (48376): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1322)
2017-11-22 03:44:35 (48376): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1323)
2017-11-22 03:44:35 (48376): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1324)
2017-11-22 03:44:35 (48376): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1328)
2017-11-22 03:44:36 (48376): Guest Log: Wed Nov 22 03:44:33 UTC 2017 dhcp -------------------------------
2017-11-22 03:44:36 (48376): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar 4 2016 17:38:55) release log
2017-11-22 03:44:36 (48376): Guest Log: 00:00:00.000102 main Log opened 2017-11-22T03:44:33.235444000Z
2017-11-22 03:44:36 (48376): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar 4 2016 17:38:55) release log
2017-11-22 03:44:36 (48376): Guest Log: 00:00:00.000102 main Log opened 2017-11-22T03:44:33.235444000Z
2017-11-22 03:44:36 (48376): Guest Log: 00:00:00.004108 main OS Product: Linux
2017-11-22 03:44:36 (48376): Guest Log: 00:00:00.004179 main OS Release: 4.1.19-boot2docker
2017-11-22 03:44:36 (48376): Guest Log: 00:00:00.004277 main OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2017-11-22 03:44:36 (48376): Guest Log: 00:00:00.004338 main Executable: /sbin/VBoxService
2017-11-22 03:44:36 (48376): Guest Log: 00:00:00.004340 main Process ID: 877
2017-11-22 03:44:36 (48376): Guest Log: 00:00:00.004342 main Package type: LINUX_64BITS_GENERIC
2017-11-22 03:44:36 (48376): Guest Log: 00:00:00.004108 main OS Product: Linux
2017-11-22 03:44:36 (48376): Guest Log: 00:00:00.004179 main OS Release: 4.1.19-boot2docker
2017-11-22 03:44:36 (48376): Guest Log: 00:00:00.004277 main OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2017-11-22 03:44:36 (48376): Guest Log: 00:00:00.004338 main Executable: /sbin/VBoxService
2017-11-22 03:44:36 (48376): Guest Log: 00:00:00.004340 main Process ID: 877
2017-11-22 03:44:36 (48376): Guest Log: 00:00:00.004342 main Package type: LINUX_64BITS_GENERIC
2017-11-22 03:44:36 (48376): Guest Log: 00:00:00.011993 main 5.0.16 r105871 started. Verbose level = 0
2017-11-22 03:44:36 (48376): Guest Log: 000:00:00.016713 vminfo rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2017-11-22 03:44:36 (48376): Guest Log: 00:00:00.016780 vminfo Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2017-11-22 03:44:36 (48376): Guest Log: 0:00:00.011993 main 5.0.16 r105871 started. Verbose level = 0
2017-11-22 03:44:36 (48376): Guest Log: Mounting BOINC shared/...
2017-11-22 03:44:36 (48376): Guest Log: -------------------
2017-11-22 03:44:36 (48376): Guest Log: Wed Nov 22 08:44:35 UTC 2017
2017-11-22 03:44:40 (48376): Guest Log: 00:00:05.020448 vminfo Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2017-11-22 03:44:40 (48376): Guest Log: Wed Nov 22 08:46:58 UTC 2017
2017-11-22 03:44:40 (48376): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default
2017-11-22 03:44:40 (48376): Guest Log: link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2017-11-22 03:44:40 (48376): Guest Log: inet 127.0.0.1/8 scope host lo
2017-11-22 03:44:40 (48376): Guest Log: valid_lft forever preferred_lft forever
2017-11-22 03:44:40 (48376): Guest Log: inet6 ::1/128 scope host
2017-11-22 03:44:40 (48376): Guest Log: valid_lft forever preferred_lft forever
2017-11-22 03:44:40 (48376): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default
2017-11-22 03:44:40 (48376): Guest Log: link/ether ea:a5:32:bc:2c:d8 brd ff:ff:ff:ff:ff:ff
2017-11-22 03:44:40 (48376): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2017-11-22 03:44:40 (48376): Guest Log: link/ether 08:00:27:13:64:15 brd ff:ff:ff:ff:ff:ff
2017-11-22 03:44:40 (48376): Guest Log: inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2017-11-22 03:44:40 (48376): Guest Log: valid_lft forever preferred_lft forever
2017-11-22 03:44:40 (48376): Guest Log: inet6 fe80::a00:27ff:fe13:6415/64 scope link
2017-11-22 03:44:40 (48376): Guest Log: valid_lft forever preferred_lft forever
2017-11-22 03:44:40 (48376): Guest Log: -------------------
2017-11-22 03:44:40 (48376): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2017-11-22 03:44:40 (48376): Guest Log: Waiting for Docker daemon to start...
2017-11-22 03:44:41 (48376): Guest Log: REPOSITORY TAG IMAGE ID CREATED SIZE
2017-11-22 03:44:41 (48376): Guest Log: Running boinc_app...
2017-11-22 03:44:41 (48376): Guest Log: Importing Docker image from BOINC...
2017-11-22 03:44:41 (48376): Guest Log: Filesystem Size Used Available Use% Mounted on
2017-11-22 03:44:41 (48376): Guest Log: tmpfs 2.6G 164.2M 2.5G 6% /
2017-11-22 03:44:41 (48376): Guest Log: tmpfs 1.5G 0 1.5G 0% /dev/shm
2017-11-22 03:44:41 (48376): Guest Log: cgroup 1.5G 0 1.5G 0% /sys/fs/cgroup
2017-11-22 03:44:41 (48376): Guest Log: shared 1.8T 240.1G 1.6T 13% /root/shared
2017-11-22 03:44:41 (48376): Guest Log: tmpfs 2.6G 164.2M 2.5G 6% /var/lib/docker/aufs
2017-11-22 03:44:45 (48376): Guest Log: 00:00:10.042779 vminfo Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2017-11-22 03:45:02 (48376): Guest Log: doing docker load...
2017-11-22 03:45:28 (48376): Guest Log: Filesystem Size Used Available Use% Mounted on
2017-11-22 03:45:28 (48376): Guest Log: tmpfs 2.6G 651.5M 2.0G 24% /
2017-11-22 03:45:28 (48376): Guest Log: tmpfs 1.5G 0 1.5G 0% /dev/shm
2017-11-22 03:45:28 (48376): Guest Log: cgroup 1.5G 0 1.5G 0% /sys/fs/cgroup
2017-11-22 03:45:28 (48376): Guest Log: shared 1.8T 239.9G 1.6T 13% /root/shared
2017-11-22 03:45:28 (48376): Guest Log: tmpfs 2.6G 651.5M 2.0G 24% /var/lib/docker/aufs
2017-11-22 03:45:28 (48376): Guest Log: total used free shared buff/cache available
2017-11-22 03:45:28 (48376): Guest Log: Mem: 3007 51 2266 651 689 2266
2017-11-22 03:45:28 (48376): Guest Log: Swap: 700 0 700
2017-11-22 03:45:28 (48376): Guest Log: Building apps directory...
2017-11-22 03:45:33 (48376): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2017-11-22 03:45:43 (48376): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077_links.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2017-11-22 03:45:44 (48376): Guest Log: mv /root/shared/appsSource/rappture /root/shared/apps/share64/debian7/environ.d
2017-11-22 03:47:53 (48376): Guest Log: Prerun diagnostics...
2017-11-22 03:47:53 (48376): Guest Log: REPOSITORY TAG IMAGE ID CREATED SIZE
2017-11-22 03:47:53 (48376): Guest Log: nanohub_apps_share64_matlab 4 dd077e9bdfac 38 hours ago 476.7 MB
2017-11-22 03:47:53 (48376): Guest Log: CONTAINER ID IMAGE COMMAND CREATED STATUS PORTS NAMES
2017-11-22 03:47:53 (48376): Guest Log: 487.4M /var/lib/docker
2017-11-22 03:47:53 (48376): Guest Log: total used free shared buff/cache available
2017-11-22 03:47:53 (48376): Guest Log: Mem: 3007 54 2250 651 701 2260
2017-11-22 03:47:53 (48376): Guest Log: Swap: 700 0 700
2017-11-22 03:47:53 (48376): Guest Log: Filesystem Size Used Available Use% Mounted on
2017-11-22 03:47:53 (48376): Guest Log: tmpfs 2.6G 651.5M 2.0G 24% /
2017-11-22 03:47:53 (48376): Guest Log: tmpfs 1.5G 0 1.5G 0% /dev/shm
2017-11-22 03:47:53 (48376): Guest Log: cgroup 1.5G 0 1.5G 0% /sys/fs/cgroup
2017-11-22 03:47:53 (48376): Guest Log: shared 1.8T 240.4G 1.6T 13% /root/shared
2017-11-22 03:47:53 (48376): Guest Log: tmpfs 2.6G 651.5M 2.0G 24% /var/lib/docker/aufs
2017-11-22 03:47:53 (48376): Guest Log: Running...
2017-11-22 03:47:53 (48376): Guest Log: 00335691_01.boinc
2017-11-22 03:47:53 (48376): Guest Log: 00335691_01.sh
2017-11-22 03:47:53 (48376): Guest Log: + exitStatus=0
2017-11-22 03:47:53 (48376): Guest Log: + ./00335691_01.sh
2017-11-22 03:48:10 (48376): Guest Log: + exitStatus=0
2017-11-22 03:48:10 (48376): Guest Log: + [ -s 00335691_01_output.tar.gz ]
2017-11-22 03:48:10 (48376): Guest Log: + [ -f boinc_00335691_01.stdout ]
2017-11-22 03:48:10 (48376): Guest Log: + tar rf 00335691_01_output.tar boinc_00335691_01.stdout
2017-11-22 03:48:10 (48376): Guest Log: + [ 0 -ne 0 ]
2017-11-22 03:48:10 (48376): Guest Log: + [ -f boinc_00335691_01.stderr ]
2017-11-22 03:48:10 (48376): Guest Log: + tar rf 00335691_01_output.tar boinc_00335691_01.stderr
2017-11-22 03:48:10 (48376): Guest Log: + [ 0 -ne 0 ]
2017-11-22 03:48:10 (48376): Guest Log: + [ -f 00335691_01_output.tar ]
2017-11-22 03:48:10 (48376): Guest Log: + gzip --force 00335691_01_output.tar
2017-11-22 03:48:10 (48376): Guest Log: + [ 0 -ne 0 ]
2017-11-22 03:48:10 (48376): Guest Log: + exit 0
2017-11-22 03:48:10 (48376): Guest Log: boinc_app exited (0)
2017-11-22 03:48:10 (48376): Guest Log: Saving results...
2017-11-22 03:48:10 (48376): Guest Log: 00335691_01_output.tar.gz
2017-11-22 03:48:10 (48376): VM Completion File Detected.
2017-11-22 03:48:10 (48376): Powering off VM.
2017-11-22 03:48:11 (48376): Successfully stopped VM.
2017-11-22 03:48:11 (48376): Deregistering VM. (boinc_e3a951d392fa064e, slot#3)
2017-11-22 03:48:11 (48376): Removing network bandwidth throttle group from VM.
2017-11-22 03:48:11 (48376): Removing storage controller(s) from VM.
2017-11-22 03:48:11 (48376): Removing VM from VirtualBox.
2017-11-22 03:48:11 (48376): Removing virtual ISO 9660 disk from VirtualBox.
03:48:16 (48376): called boinc_finish(0)
</stderr_txt>
]]>
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