Task 6603
| Name | 00335072_01_0 |
| Workunit | 3670 |
| Created | 10 Nov 2017, 12:52:28 UTC |
| Sent | 10 Nov 2017, 16:38:46 UTC |
| Report deadline | 11 Nov 2017, 0:38:46 UTC |
| Received | 10 Nov 2017, 16:59:37 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 13 |
| Run time | 9 min 4 sec |
| CPU time | 2 min 29 sec |
| Validate state | Valid |
| Credit | 4.82 |
| Device peak FLOPS | 2.47 GFLOPS |
| Application version | boinc2docker v1.11 (vbox64_mt) x86_64-pc-linux-gnu |
| Peak working set size | 94.33 MB |
| Peak swap size | 3.41 GB |
| Peak disk usage | 788.75 MB |
Stderr output
<core_client_version>7.4.23</core_client_version>
<![CDATA[
<stderr_txt>
2017-11-10 11:42:52 (27768): vboxwrapper (7.7.26197): starting
2017-11-10 11:42:52 (27768): Feature: Checkpoint interval offset (580 seconds)
2017-11-10 11:42:52 (27768): Detected: VirtualBox VboxManage Interface (Version: 5.1.8)
2017-11-10 11:42:52 (27768): Detected: Minimum checkpoint interval (600.000000 seconds)
2017-11-10 11:42:52 (27768): Create VM. (boinc_64de3f2caa4cb827, slot#6)
2017-11-10 11:42:52 (27768): Updating drive controller type and model for desired configuration.
2017-11-10 11:43:02 (27768): Setting Memory Size for VM. (3072MB)
2017-11-10 11:43:02 (27768): Setting CPU Count for VM. (1)
2017-11-10 11:43:02 (27768): Setting Chipset Options for VM.
2017-11-10 11:43:03 (27768): Setting Boot Options for VM.
2017-11-10 11:43:03 (27768): Setting Network Configuration for NAT.
2017-11-10 11:43:03 (27768): Enabling VM Network Access.
2017-11-10 11:43:03 (27768): Disabling USB Support for VM.
2017-11-10 11:43:03 (27768): Disabling COM Port Support for VM.
2017-11-10 11:43:03 (27768): Disabling LPT Port Support for VM.
2017-11-10 11:43:04 (27768): Disabling Audio Support for VM.
2017-11-10 11:43:04 (27768): Disabling Clipboard Support for VM.
2017-11-10 11:43:04 (27768): Disabling Drag and Drop Support for VM.
2017-11-10 11:43:04 (27768): Adding storage controller(s) to VM.
2017-11-10 11:43:04 (27768): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2017-11-10 11:43:04 (27768): Adding VirtualBox Guest Additions to VM.
2017-11-10 11:43:05 (27768): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2017-11-10 11:43:05 (27768): Enabling shared directory for VM.
2017-11-10 11:43:10 (27768): Starting VM. (boinc_64de3f2caa4cb827, slot#6)
2017-11-10 11:43:14 (27768): Successfully started VM. (PID = '29183')
2017-11-10 11:43:14 (27768): Reporting VM Process ID to BOINC.
2017-11-10 11:43:14 (27768): Guest Log: BIOS: VirtualBox 5.1.8
2017-11-10 11:43:14 (27768): VM state change detected. (old = 'poweroff', new = 'running')
2017-11-10 11:43:14 (27768): Preference change detected
2017-11-10 11:43:14 (27768): Setting CPU throttle for VM. (40%)
2017-11-10 11:43:22 (27768): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2017-11-10 11:43:23 (27768): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2017-11-10 11:43:23 (27768): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2017-11-10 11:43:23 (27768): Guest Log: BIOS: Boot from Hard Disk 0 failed
2017-11-10 11:43:23 (27768): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2017-11-10 11:43:23 (27768): Guest Log: BIOS: Booting from CD-ROM...
2017-11-10 11:43:26 (27768): Guest Log: BIOS: KBD: unsupported int 16h function 03
2017-11-10 11:43:26 (27768): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000
2017-11-10 11:43:50 (27768): Guest Log: net.ipv4.ip_forward = 1
2017-11-10 11:43:50 (27768): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2017-11-10 11:43:50 (27768): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2017-11-10 11:43:50 (27768): Guest Log: sysctl: "cannot stat %s" is an unknown key
2017-11-10 11:43:50 (27768): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2017-11-10 11:43:50 (27768): Guest Log: Segmentation fault
2017-11-10 11:43:51 (27768): Guest Log: automount ...
2017-11-10 11:43:51 (27768): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2017-11-10 11:43:51 (27768): Guest Log: automount over.
2017-11-10 11:43:51 (27768): Guest Log: [1;32mSetting hostname to [1;35mboot2docker[0;39m [1;32mDone.[0;39m
2017-11-10 11:43:51 (27768): Guest Log: Fri Nov 10 11:43:49 UTC 2017 dhcp -------------------------------
2017-11-10 11:43:52 (27768): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2017-11-10 11:43:52 (27768): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2017-11-10 11:43:56 (27768): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1065)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00 (1284)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXCPU:00 (1285)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXPWRBN:00 (1286)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1287)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1288)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1289)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1290)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1291)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1292)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1293)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1294)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1298)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1299)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1300)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6 (1301)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6/event5 (1302)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1303)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1304)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1305)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1306)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1307)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1308)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1309)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1310)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1311)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1312)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1313)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1314)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1315)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1316)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1317)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1318)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1319)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1320)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1321)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1322)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1323)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1324)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1325)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1326)
2017-11-10 11:43:56 (27768): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1327)
2017-11-10 11:43:57 (27768): Guest Log: Fri Nov 10 11:43:55 UTC 2017 dhcp -------------------------------
2017-11-10 11:43:57 (27768): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar 4 2016 17:38:55) release log
2017-11-10 11:43:57 (27768): Guest Log: 00:00:00.000093 main Log opened 2017-11-10T11:43:55.654658000Z
2017-11-10 11:43:57 (27768): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar 4 2016 17:38:55) release log
2017-11-10 11:43:57 (27768): Guest Log: 00:00:00.000093 main Log opened 2017-11-10T11:43:55.654658000Z
2017-11-10 11:43:57 (27768): Guest Log: 00:00:00.003520 main OS Product: Linux
2017-11-10 11:43:57 (27768): Guest Log: 00:00:00.003628 main 00:00:00.068959 main 5.0.16 r105871 started. Verbose level = 0
2017-11-10 11:43:57 (27768): Guest Log: OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2017-11-10 11:43:57 (27768): Guest Log: 00:00:00.003673 main Executable: /sbin/VBoxService
2017-11-10 11:43:57 (27768): Guest Log: 00:00:00.003675 main Process ID: 861
2017-11-10 11:43:57 (27768): Guest Log: 00:00:00.003676 main Package type: LINUX_64BITS_GENERIC
2017-11-10 11:43:57 (27768): Guest Log: 00:00:00.068959 main 5.0.16 r105871 started. Verbose level = 0
2017-11-10 11:43:57 (27768): Guest Log: 00:00:00.079557 vminfo rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2017-11-10 11:43:57 (27768): Guest Log: 00:00:00.079617 vminfo Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2017-11-10 11:43:58 (27768): Guest Log: Mounting BOINC shared/...
2017-11-10 11:43:58 (27768): Guest Log: -------------------
2017-11-10 11:43:58 (27768): Guest Log: Fri Nov 10 16:43:57 UTC 2017
2017-11-10 11:44:03 (27768): Guest Log: 00:00:05.081003 vminfo Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2017-11-10 11:44:03 (27768): Guest Log: Fri Nov 10 16:44:02 UTC 2017
2017-11-10 11:44:03 (27768): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default
2017-11-10 11:44:03 (27768): Guest Log: link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2017-11-10 11:44:03 (27768): Guest Log: inet 127.0.0.1/8 scope host lo
2017-11-10 11:44:03 (27768): Guest Log: valid_lft forever preferred_lft forever
2017-11-10 11:44:03 (27768): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default
2017-11-10 11:44:03 (27768): Guest Log: link/ether 0a:6a:5f:a7:3b:b5 brd ff:ff:ff:ff:ff:ff
2017-11-10 11:44:03 (27768): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2017-11-10 11:44:03 (27768): Guest Log: link/ether 08:00:27:03:ca:21 brd ff:ff:ff:ff:ff:ff
2017-11-10 11:44:03 (27768): Guest Log: inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2017-11-10 11:44:03 (27768): Guest Log: valid_lft forever preferred_lft forever
2017-11-10 11:44:03 (27768): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2017-11-10 11:44:03 (27768): Guest Log: Waiting for Docker daemon to start...
2017-11-10 11:44:04 (27768): Guest Log: REPOSITORY TAG IMAGE ID CREATED SIZE
2017-11-10 11:44:04 (27768): Guest Log: Running boinc_app...
2017-11-10 11:44:04 (27768): Guest Log: Importing Docker image from BOINC...
2017-11-10 11:44:04 (27768): Guest Log: Filesystem Size Used Available Use% Mounted on
2017-11-10 11:44:04 (27768): Guest Log: tmpfs 2.6G 164.1M 2.5G 6% /
2017-11-10 11:44:04 (27768): Guest Log: tmpfs 1.5G 0 1.5G 0% /dev/shm
2017-11-10 11:44:04 (27768): Guest Log: cgroup 1.5G 0 1.5G 0% /sys/fs/cgroup
2017-11-10 11:44:04 (27768): Guest Log: shared 281.2G 234.0G 47.2G 83% /root/shared
2017-11-10 11:44:04 (27768): Guest Log: tmpfs 2.6G 164.1M 2.5G 6% /var/lib/docker/aufs
2017-11-10 11:44:08 (27768): Guest Log: 00:00:10.089397 vminfo Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2017-11-10 11:44:31 (27768): Guest Log: doing docker load...
2017-11-10 11:45:08 (27768): Guest Log: Filesystem Size Used Available Use% Mounted on
2017-11-10 11:45:08 (27768): Guest Log: tmpfs 2.6G 651.5M 2.0G 24% /
2017-11-10 11:45:08 (27768): Guest Log: tmpfs 1.5G 0 1.5G 0% /dev/shm
2017-11-10 11:45:08 (27768): Guest Log: cgroup 1.5G 0 1.5G 0% /sys/fs/cgroup
2017-11-10 11:45:08 (27768): Guest Log: shared 281.2G 235.4G 45.7G 84% /root/shared
2017-11-10 11:45:08 (27768): Guest Log: tmpfs 2.6G 651.5M 2.0G 24% /var/lib/docker/aufs
2017-11-10 11:45:08 (27768): Guest Log: total used free shared buff/cache available
2017-11-10 11:45:08 (27768): Guest Log: Mem: 3007 51 2265 651 690 2265
2017-11-10 11:45:08 (27768): Guest Log: Swap: 700 0 700
2017-11-10 11:45:08 (27768): Guest Log: Building apps directory...
2017-11-10 11:45:36 (27768): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2017-11-10 11:45:50 (27768): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077_links.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2017-11-10 11:45:50 (27768): Guest Log: mv /root/shared/appsSource/rappture /root/shared/apps/share64/debian7/environ.d
2017-11-10 11:50:46 (27768): Guest Log: Prerun diagnostics...
2017-11-10 11:50:46 (27768): Guest Log: REPOSITORY TAG IMAGE ID CREATED SIZE
2017-11-10 11:50:46 (27768): Guest Log: nanohub_apps_share64_matlab 2 a139d2f99d7b 10 weeks ago 476.6 MB
2017-11-10 11:50:46 (27768): Guest Log: CONTAINER ID IMAGE COMMAND CREATED STATUS PORTS NAMES
2017-11-10 11:50:46 (27768): Guest Log: 487.4M /var/lib/docker
2017-11-10 11:50:46 (27768): Guest Log: total used free shared buff/cache available
2017-11-10 11:50:46 (27768): Guest Log: Mem: 3007 54 2251 651 701 2261
2017-11-10 11:50:46 (27768): Guest Log: Swap: 700 0 700
2017-11-10 11:50:46 (27768): Guest Log: Filesystem Size Used Available Use% Mounted on
2017-11-10 11:50:46 (27768): Guest Log: tmpfs 2.6G 651.5M 2.0G 24% /
2017-11-10 11:50:46 (27768): Guest Log: tmpfs 1.5G 0 1.5G 0% /dev/shm
2017-11-10 11:50:46 (27768): Guest Log: cgroup 1.5G 0 1.5G 0% /sys/fs/cgroup
2017-11-10 11:50:46 (27768): Guest Log: shared 281.2G 237.5G 43.6G 84% /root/shared
2017-11-10 11:50:46 (27768): Guest Log: tmpfs 2.6G 651.5M 2.0G 24% /var/lib/docker/aufs
2017-11-10 11:50:46 (27768): Guest Log: Running...
2017-11-10 11:50:47 (27768): Guest Log: 00335072_01.boinc
2017-11-10 11:50:47 (27768): Guest Log: 00335072_01.sh
2017-11-10 11:51:49 (27768): Guest Log: gzip: 00335072_01_output.tar.gz: unexpected end of file
2017-11-10 11:51:49 (27768): Guest Log: boinc_app exited (0)
2017-11-10 11:51:49 (27768): Guest Log: Saving results...
2017-11-10 11:51:49 (27768): Guest Log: 00335072_01_output.tar.gz
2017-11-10 11:51:49 (27768): VM Completion File Detected.
2017-11-10 11:51:49 (27768): Powering off VM.
2017-11-10 11:51:49 (27768): Successfully stopped VM.
2017-11-10 11:51:49 (27768): Deregistering VM. (boinc_64de3f2caa4cb827, slot#6)
2017-11-10 11:51:49 (27768): Removing network bandwidth throttle group from VM.
2017-11-10 11:51:50 (27768): Removing storage controller(s) from VM.
2017-11-10 11:51:50 (27768): Removing VM from VirtualBox.
2017-11-10 11:51:50 (27768): Removing virtual ISO 9660 disk from VirtualBox.
11:51:55 (27768): called boinc_finish(0)
</stderr_txt>
]]>
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