Task 6416
| Name | 00335005_01_0 |
| Workunit | 3607 |
| Created | 10 Nov 2017, 3:47:27 UTC |
| Sent | 10 Nov 2017, 10:21:48 UTC |
| Report deadline | 10 Nov 2017, 18:21:48 UTC |
| Received | 10 Nov 2017, 12:47:49 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 13 |
| Run time | 2 min 36 sec |
| CPU time | 56 sec |
| Validate state | Valid |
| Credit | 0.83 |
| Device peak FLOPS | 2.28 GFLOPS |
| Application version | boinc2docker v1.11 (vbox64_mt) x86_64-pc-linux-gnu |
| Peak working set size | 93.72 MB |
| Peak swap size | 3.48 GB |
| Peak disk usage | 274.68 MB |
Stderr output
<core_client_version>7.4.23</core_client_version>
<![CDATA[
<stderr_txt>
2017-11-10 05:21:32 (47502): vboxwrapper (7.7.26197): starting
2017-11-10 05:21:32 (47502): Feature: Checkpoint interval offset (437 seconds)
2017-11-10 05:21:32 (47502): Detected: VirtualBox VboxManage Interface (Version: 5.1.8)
2017-11-10 05:21:32 (47502): Detected: Minimum checkpoint interval (600.000000 seconds)
2017-11-10 05:21:33 (47502): Create VM. (boinc_8014c9b4b27a1343, slot#2)
2017-11-10 05:21:33 (47502): Updating drive controller type and model for desired configuration.
2017-11-10 05:21:36 (47502): Setting Memory Size for VM. (3072MB)
2017-11-10 05:21:36 (47502): Setting CPU Count for VM. (1)
2017-11-10 05:21:36 (47502): Setting Chipset Options for VM.
2017-11-10 05:21:36 (47502): Setting Boot Options for VM.
2017-11-10 05:21:37 (47502): Setting Network Configuration for NAT.
2017-11-10 05:21:37 (47502): Enabling VM Network Access.
2017-11-10 05:21:37 (47502): Disabling USB Support for VM.
2017-11-10 05:21:37 (47502): Disabling COM Port Support for VM.
2017-11-10 05:21:37 (47502): Disabling LPT Port Support for VM.
2017-11-10 05:21:47 (47502): Disabling Audio Support for VM.
2017-11-10 05:21:47 (47502): Disabling Clipboard Support for VM.
2017-11-10 05:21:48 (47502): Disabling Drag and Drop Support for VM.
2017-11-10 05:21:48 (47502): Adding storage controller(s) to VM.
2017-11-10 05:21:48 (47502): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2017-11-10 05:21:48 (47502): Adding VirtualBox Guest Additions to VM.
2017-11-10 05:21:48 (47502): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2017-11-10 05:21:48 (47502): Enabling shared directory for VM.
2017-11-10 05:24:13 (51659): vboxwrapper (7.7.26197): starting
2017-11-10 05:24:13 (51659): Feature: Checkpoint interval offset (9 seconds)
2017-11-10 05:24:13 (51659): Detected: VirtualBox VboxManage Interface (Version: 5.1.8)
2017-11-10 05:24:13 (51659): Detected: Minimum checkpoint interval (600.000000 seconds)
2017-11-10 05:24:13 (51659): Starting VM. (boinc_8014c9b4b27a1343, slot#2)
2017-11-10 05:24:14 (51659): Successfully started VM. (PID = '51730')
2017-11-10 05:24:14 (51659): Reporting VM Process ID to BOINC.
2017-11-10 05:24:15 (51659): Guest Log: BIOS: VirtualBox 5.1.8
2017-11-10 05:24:15 (51659): VM state change detected. (old = 'poweroff', new = 'running')
2017-11-10 05:24:15 (51659): Preference change detected
2017-11-10 05:24:15 (51659): Setting CPU throttle for VM. (40%)
2017-11-10 05:24:15 (51659): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2017-11-10 05:24:17 (51659): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2017-11-10 05:24:17 (51659): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2017-11-10 05:24:17 (51659): Guest Log: BIOS: Boot from Hard Disk 0 failed
2017-11-10 05:24:17 (51659): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2017-11-10 05:24:17 (51659): Guest Log: BIOS: Booting from CD-ROM...
2017-11-10 05:24:19 (51659): Guest Log: BIOS: KBD: unsupported int 16h function 03
2017-11-10 05:24:19 (51659): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000
2017-11-10 05:24:40 (51659): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2017-11-10 05:24:40 (51659): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2017-11-10 05:24:42 (51659): Guest Log: net.ipv4.ip_forward = 1
2017-11-10 05:24:42 (51659): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2017-11-10 05:24:42 (51659): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2017-11-10 05:24:42 (51659): Guest Log: sysctl: "cannot stat %s" is an unknown key
2017-11-10 05:24:42 (51659): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2017-11-10 05:24:42 (51659): Guest Log: Segmentation fault
2017-11-10 05:24:42 (51659): Guest Log: automount ...
2017-11-10 05:24:42 (51659): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2017-11-10 05:24:43 (51659): Guest Log: automount over.
2017-11-10 05:24:43 (51659): Guest Log: [1;32mSetting hostname to [1;35mboot2docker[0;39m [1;32mDone.[0;39m
2017-11-10 05:24:43 (51659): Guest Log: Fri Nov 10 05:24:40 UTC 2017 dhcp -------------------------------
2017-11-10 05:24:48 (51659): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1079)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00 (1304)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXCPU:00 (1305)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXPWRBN:00 (1306)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1307)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1308)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1309)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1310)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1311)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1312)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1313)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1314)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1315)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1316)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1317)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input7 (1318)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input7/event6 (1319)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1320)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1321)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1322)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1323)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1324)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1325)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1326)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1327)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1328)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1329)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1330)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1331)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1332)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1333)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1334)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1335)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1336)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1337)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1338)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1339)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1340)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1341)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1342)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1343)
2017-11-10 05:24:48 (51659): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1344)
2017-11-10 05:24:49 (51659): Guest Log: Fri Nov 10 05:24:46 UTC 2017 dhcp -------------------------------
2017-11-10 05:24:49 (51659): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar 4 2016 17:38:55) release log
2017-11-10 05:24:49 (51659): Guest Log: 00:00:00.000098 main Log opened 2017-11-10T05:24:46.420132000Z
2017-11-10 05:24:49 (51659): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar 4 2016 17:38:55) release log
2017-11-10 05:24:49 (51659): Guest Log: 00:00:00.000098 main Log opened 2017-11-10T05:24:46.420132000Z
2017-11-10 05:24:49 (51659): Guest Log: 00:00:00.003671 main OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2017-11-10 05:24:49 (51659): Guest Log: 00:00:00.007869 main 5.0.16 r105871 started. Verbose level = 0
2017-11-10 05:24:49 (51659): Guest Log: 00:00:00.003716 main Executable: /sbin/VBoxService
2017-11-10 05:24:49 (51659): Guest Log: 00:00:00.003717 main Process ID: 838
2017-11-10 05:24:49 (51659): Guest Log: 00:00:00.077910 vminfo rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2017-11-10 05:24:49 (51659): Guest Log: 00:00:00.077979 vminfo Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2017-11-10 05:24:49 (51659): Guest Log: 00:00:00.003718 main Package type: LINUX_64BITS_GENERIC
2017-11-10 05:24:49 (51659): Guest Log: 00:00:00.007869 main 5.0.16 r105871 started. Verbose level = 0
2017-11-10 05:24:49 (51659): Guest Log: Mounting BOINC shared/...
2017-11-10 05:24:49 (51659): Guest Log: -------------------
2017-11-10 05:24:49 (51659): Guest Log: Fri Nov 10 10:24:49 UTC 2017
2017-11-10 05:24:54 (51659): Guest Log: 00:00:05.079014 vminfo Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2017-11-10 05:24:54 (51659): Guest Log: Fri Nov 10 10:25:59 UTC 2017
2017-11-10 05:24:54 (51659): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default
2017-11-10 05:24:54 (51659): Guest Log: link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2017-11-10 05:24:54 (51659): Guest Log: inet 127.0.0.1/8 scope host lo
2017-11-10 05:24:54 (51659): Guest Log: valid_lft forever preferred_lft forever
2017-11-10 05:24:54 (51659): Guest Log: inet6 ::1/128 scope host
2017-11-10 05:24:54 (51659): Guest Log: valid_lft forever preferred_lft forever
2017-11-10 05:24:54 (51659): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default
2017-11-10 05:24:54 (51659): Guest Log: link/ether d6:6c:e3:18:65:23 brd ff:ff:ff:ff:ff:ff
2017-11-10 05:24:54 (51659): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2017-11-10 05:24:54 (51659): Guest Log: link/ether 08:00:27:7f:6a:0b brd ff:ff:ff:ff:ff:ff
2017-11-10 05:24:54 (51659): Guest Log: inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2017-11-10 05:24:54 (51659): Guest Log: valid_lft forever preferred_lft forever
2017-11-10 05:24:54 (51659): Guest Log: inet6 fe80::a00:27ff:fe7f:6a0b/64 scope link
2017-11-10 05:24:54 (51659): Guest Log: valid_lft forever preferred_lft forever
2017-11-10 05:24:54 (51659): Guest Log: -------------------
2017-11-10 05:24:54 (51659): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2017-11-10 05:24:54 (51659): Guest Log: Waiting for Docker daemon to start...
2017-11-10 05:24:55 (51659): Guest Log: REPOSITORY TAG IMAGE ID CREATED SIZE
2017-11-10 05:24:55 (51659): Guest Log: Running boinc_app...
2017-11-10 05:24:55 (51659): Guest Log: Importing Docker image from BOINC...
2017-11-10 05:24:55 (51659): Guest Log: Filesystem Size Used Available Use% Mounted on
2017-11-10 05:24:55 (51659): Guest Log: tmpfs 2.6G 164.2M 2.5G 6% /
2017-11-10 05:24:55 (51659): Guest Log: tmpfs 1.5G 0 1.5G 0% /dev/shm
2017-11-10 05:24:55 (51659): Guest Log: cgroup 1.5G 0 1.5G 0% /sys/fs/cgroup
2017-11-10 05:24:55 (51659): Guest Log: shared 281.2G 226.1G 55.0G 80% /root/shared
2017-11-10 05:24:55 (51659): Guest Log: tmpfs 2.6G 164.2M 2.5G 6% /var/lib/docker/aufs
2017-11-10 05:24:59 (51659): Guest Log: 00:00:10.137306 vminfo Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2017-11-10 05:25:28 (51659): Guest Log: doing docker load...
2017-11-10 05:26:05 (51659): Guest Log: Filesystem Size Used Available Use% Mounted on
2017-11-10 05:26:05 (51659): Guest Log: tmpfs 2.6G 783.3M 1.9G 29% /
2017-11-10 05:26:05 (51659): Guest Log: tmpfs 1.5G 0 1.5G 0% /dev/shm
2017-11-10 05:26:05 (51659): Guest Log: cgroup 1.5G 0 1.5G 0% /sys/fs/cgroup
2017-11-10 05:26:05 (51659): Guest Log: shared 281.2G 226.1G 55.1G 80% /root/shared
2017-11-10 05:26:05 (51659): Guest Log: tmpfs 2.6G 783.3M 1.9G 29% /var/lib/docker/aufs
2017-11-10 05:26:05 (51659): Guest Log: total used free shared buff/cache available
2017-11-10 05:26:05 (51659): Guest Log: Mem: 3007 53 2126 783 827 2128
2017-11-10 05:26:05 (51659): Guest Log: Swap: 700 0 700
2017-11-10 05:26:05 (51659): Guest Log: Building apps directory...
2017-11-10 05:26:10 (51659): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2017-11-10 05:26:20 (51659): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077_links.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2017-11-10 05:26:20 (51659): Guest Log: mv /root/shared/appsSource/rappture /root/shared/apps/share64/debian7/environ.d
2017-11-10 05:26:20 (51659): Guest Log: Prerun diagnostics...
2017-11-10 05:26:20 (51659): Guest Log: REPOSITORY TAG IMAGE ID CREATED SIZE
2017-11-10 05:26:20 (51659): Guest Log: nanohub_apps_scipy 3 b8b4bf34b085 5 months ago 610 MB
2017-11-10 05:26:20 (51659): Guest Log: CONTAINER ID IMAGE COMMAND CREATED STATUS PORTS NAMES
2017-11-10 05:26:20 (51659): Guest Log: 619.2M /var/lib/docker
2017-11-10 05:26:20 (51659): Guest Log: total used free shared buff/cache available
2017-11-10 05:26:20 (51659): Guest Log: Mem: 3007 54 2123 783 829 2126
2017-11-10 05:26:20 (51659): Guest Log: Swap: 700 0 700
2017-11-10 05:26:20 (51659): Guest Log: Filesystem Size Used Available Use% Mounted on
2017-11-10 05:26:20 (51659): Guest Log: tmpfs 2.6G 783.3M 1.9G 29% /
2017-11-10 05:26:20 (51659): Guest Log: tmpfs 1.5G 0 1.5G 0% /dev/shm
2017-11-10 05:26:20 (51659): Guest Log: cgroup 1.5G 0 1.5G 0% /sys/fs/cgroup
2017-11-10 05:26:20 (51659): Guest Log: shared 281.2G 226.2G 55.0G 80% /root/shared
2017-11-10 05:26:20 (51659): Guest Log: tmpfs 2.6G 783.3M 1.9G 29% /var/lib/docker/aufs
2017-11-10 05:26:20 (51659): Guest Log: Running...
2017-11-10 05:26:20 (51659): Guest Log: 00335005_01.boinc
2017-11-10 05:26:20 (51659): Guest Log: 00335005_01.sh
2017-11-10 05:26:41 (51659): Guest Log: gzip: 00335005_01_output.tar.gz: unexpected end of file
2017-11-10 05:26:41 (51659): Guest Log: boinc_app exited (0)
2017-11-10 05:26:41 (51659): Guest Log: Saving results...
2017-11-10 05:26:41 (51659): Guest Log: 00335005_01_output.tar.gz
2017-11-10 05:26:41 (51659): VM Completion File Detected.
2017-11-10 05:26:41 (51659): Powering off VM.
2017-11-10 05:26:42 (51659): Successfully stopped VM.
2017-11-10 05:26:42 (51659): Deregistering VM. (boinc_8014c9b4b27a1343, slot#2)
2017-11-10 05:26:42 (51659): Removing network bandwidth throttle group from VM.
2017-11-10 05:26:42 (51659): Removing storage controller(s) from VM.
2017-11-10 05:26:42 (51659): Removing VM from VirtualBox.
2017-11-10 05:26:42 (51659): Removing virtual ISO 9660 disk from VirtualBox.
05:26:47 (51659): called boinc_finish(0)
</stderr_txt>
]]>
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