Task 6033

Name 00334135_01_0
Workunit 3247
Created 26 Sep 2017, 1:04:30 UTC
Sent 26 Sep 2017, 1:06:11 UTC
Report deadline 26 Sep 2017, 9:06:11 UTC
Received 26 Sep 2017, 1:20:36 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 6
Run time 11 min 44 sec
CPU time 6 min 24 sec
Validate state Valid
Credit 3.11
Device peak FLOPS 2.24 GFLOPS
Application version boinc2docker v1.11 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 1.82 GB
Peak swap size 3.34 GB
Peak disk usage 3.12 GB

Stderr output

<core_client_version>7.4.23</core_client_version>
<![CDATA[
<stderr_txt>
2017-09-25 21:07:47 (12202): vboxwrapper (7.7.26197): starting
2017-09-25 21:07:47 (12202): Feature: Checkpoint interval offset (557 seconds)
2017-09-25 21:07:47 (12202): Detected: VirtualBox VboxManage Interface (Version: 5.1.8)
2017-09-25 21:07:47 (12202): Detected: Minimum checkpoint interval (600.000000 seconds)
2017-09-25 21:07:47 (12202): Create VM. (boinc_7a5ec2cd9aa816a1, slot#5)
2017-09-25 21:07:47 (12202): Updating drive controller type and model for desired configuration.
2017-09-25 21:07:58 (12202): Setting Memory Size for VM. (3072MB)
2017-09-25 21:07:58 (12202): Setting CPU Count for VM. (1)
2017-09-25 21:07:59 (12202): Setting Chipset Options for VM.
2017-09-25 21:07:59 (12202): Setting Boot Options for VM.
2017-09-25 21:07:59 (12202): Setting Network Configuration for NAT.
2017-09-25 21:07:59 (12202): Enabling VM Network Access.
2017-09-25 21:08:00 (12202): Disabling USB Support for VM.
2017-09-25 21:08:00 (12202): Disabling COM Port Support for VM.
2017-09-25 21:08:00 (12202): Disabling LPT Port Support for VM.
2017-09-25 21:08:01 (12202): Disabling Audio Support for VM.
2017-09-25 21:08:01 (12202): Disabling Clipboard Support for VM.
2017-09-25 21:08:02 (12202): Disabling Drag and Drop Support for VM.
2017-09-25 21:08:02 (12202): Adding storage controller(s) to VM.
2017-09-25 21:08:02 (12202): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2017-09-25 21:08:02 (12202): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2017-09-25 21:08:03 (12202): Enabling shared directory for VM.
2017-09-25 21:08:03 (12202): Starting VM. (boinc_7a5ec2cd9aa816a1, slot#5)
2017-09-25 21:08:05 (12202): Successfully started VM. (PID = '12994')
2017-09-25 21:08:05 (12202): Reporting VM Process ID to BOINC.
2017-09-25 21:08:05 (12202): Guest Log: BIOS: VirtualBox 5.1.8
2017-09-25 21:08:05 (12202): VM state change detected. (old = 'poweroff', new = 'running')
2017-09-25 21:08:05 (12202): Preference change detected
2017-09-25 21:08:05 (12202): Setting CPU throttle for VM. (75%)
2017-09-25 21:08:06 (12202): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2017-09-25 21:08:07 (12202): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2017-09-25 21:08:07 (12202): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2017-09-25 21:08:07 (12202): Guest Log: BIOS: Boot from Hard Disk 0 failed
2017-09-25 21:08:07 (12202): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2017-09-25 21:08:07 (12202): Guest Log: BIOS: Booting from CD-ROM...
2017-09-25 21:08:19 (12202): Guest Log: BIOS: KBD: unsupported int 16h function 03
2017-09-25 21:08:19 (12202): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2017-09-25 21:08:39 (12202): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2017-09-25 21:08:39 (12202): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2017-09-25 21:08:40 (12202): Guest Log: net.ipv4.ip_forward = 1
2017-09-25 21:08:40 (12202): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2017-09-25 21:08:40 (12202): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2017-09-25 21:08:40 (12202): Guest Log: sysctl: "cannot stat %s" is an unknown key
2017-09-25 21:08:40 (12202): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2017-09-25 21:08:40 (12202): Guest Log: Segmentation fault
2017-09-25 21:08:41 (12202): Guest Log: automount ...
2017-09-25 21:08:43 (12202): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2017-09-25 21:08:43 (12202): Guest Log: automount over.
2017-09-25 21:08:44 (12202): Guest Log: Setting hostname to boot2docker Done.
2017-09-25 21:08:44 (12202): Guest Log: Mon Sep 25 21:08:42 UTC 2017 dhcp -------------------------------
2017-09-25 21:08:49 (12202): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2017-09-25 21:08:49 (12202): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1314)
2017-09-25 21:08:50 (12202): Guest Log: Mon Sep 25 21:08:48 UTC 2017 dhcp -------------------------------
2017-09-25 21:08:51 (12202): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2017-09-25 21:08:51 (12202): Guest Log: 00:00:00.000702 main     Log opened 2017-09-25T21:08:49.086627000Z
2017-09-25 21:08:51 (12202): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2017-09-25 21:08:51 (12202): Guest Log: 00:00:00.000702 main     Log opened 2017-09-25T21:08:49.086627000Z
2017-09-25 21:08:51 (12202): Guest Log: 00:00:00.006765 main     OS Product: Linux
2017-09-25 21:08:51 (12202): Guest Log: 00:00:00.006765 main     OS Product: Linux
2017-09-25 21:08:51 (12202): Guest Log: 00:00:00.018543 main     OS Release: 4.1.19-boot2docker
2017-09-25 21:08:51 (12202): Guest Log: 00:00:00.018543 main     OS Release: 4.1.19-boot2docker
2017-09-25 21:08:51 (12202): Guest Log: 00:00:00.019996 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2017-09-25 21:08:51 (12202): Guest Log: 00:00:00.020062 main     Executable: /sbin/VBoxService
2017-09-25 21:08:51 (12202): Guest Log: 00:00:00.020064 main     Process ID: 743
2017-09-25 21:08:51 (12202): Guest Log: 00:00:00.020065 main     Package type: LINUX_64BITS_GENERIC
2017-09-25 21:08:51 (12202): Guest Log: 00:00:00.019996 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2017-09-25 21:08:51 (12202): Guest Log: 00:00:00.020062 main     Executable: /sbin/VBoxService
2017-09-25 21:08:51 (12202): Guest Log: 00:00:00.020064 main     Process ID: 743
2017-09-25 21:08:51 (12202): Guest Log: 00:00:00.020065 main     Package type: LINUX_64BITS_GENERIC
2017-09-25 21:08:51 (12202): Guest Log: 00:00:00.031568 main     5.0.16 r105871 started. Verbose level = 0
2017-09-25 21:08:51 (12202): Guest Log: 00:00:00.031568 main     5.0.16 r105871 started. Verbose level = 0
2017-09-25 21:08:51 (12202): Guest Log: 00:00:00.084256 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2017-09-25 21:08:51 (12202): Guest Log: 00:00:00.084397 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2017-09-25 21:08:51 (12202): Guest Log: Mounting BOINC shared/...
2017-09-25 21:08:51 (12202): Guest Log: -------------------
2017-09-25 21:08:51 (12202): Guest Log: Tue Sep 26 01:08:51 UTC 2017
2017-09-25 21:08:56 (12202): Guest Log: 00:00:05.086359 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2017-09-25 21:08:56 (12202): Guest Log: Tue Sep 26 01:08:56 UTC 2017
2017-09-25 21:08:56 (12202): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2017-09-25 21:08:56 (12202): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2017-09-25 21:08:56 (12202): Guest Log:     inet 127.0.0.1/8 scope host lo
2017-09-25 21:08:56 (12202): Guest Log:        valid_lft forever preferred_lft forever
2017-09-25 21:08:56 (12202): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2017-09-25 21:08:56 (12202): Guest Log:     link/ether 42:0d:d3:a7:41:a0 brd ff:ff:ff:ff:ff:ff
2017-09-25 21:08:56 (12202): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2017-09-25 21:08:56 (12202): Guest Log:     link/ether 08:00:27:46:76:e0 brd ff:ff:ff:ff:ff:ff
2017-09-25 21:08:56 (12202): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2017-09-25 21:08:56 (12202): Guest Log:        valid_lft forever preferred_lft forever
2017-09-25 21:08:56 (12202): Guest Log: -------------------
2017-09-25 21:08:56 (12202): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2017-09-25 21:08:57 (12202): Guest Log: Waiting for Docker daemon to start...
2017-09-25 21:08:59 (12202): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2017-09-25 21:08:59 (12202): Guest Log: Running boinc_app...
2017-09-25 21:08:59 (12202): Guest Log: Importing Docker image from BOINC...
2017-09-25 21:08:59 (12202): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2017-09-25 21:08:59 (12202): Guest Log: tmpfs                     2.6G    164.1M      2.5G   6% /
2017-09-25 21:08:59 (12202): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2017-09-25 21:08:59 (12202): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2017-09-25 21:08:59 (12202): Guest Log: shared                  916.3G     79.4G    836.9G   9% /root/shared
2017-09-25 21:08:59 (12202): Guest Log: tmpfs                     2.6G    164.1M      2.5G   6% /var/lib/docker/aufs
2017-09-25 21:09:01 (12202): Guest Log: 00:00:10.089611 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2017-09-25 21:09:25 (12202): Guest Log: doing docker load...
2017-09-25 21:09:47 (12202): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2017-09-25 21:09:47 (12202): Guest Log: tmpfs                     2.6G    651.5M      2.0G  24% /
2017-09-25 21:09:47 (12202): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2017-09-25 21:09:47 (12202): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2017-09-25 21:09:47 (12202): Guest Log: shared                  916.3G     74.7G    841.6G   8% /root/shared
2017-09-25 21:09:47 (12202): Guest Log: tmpfs                     2.6G    651.5M      2.0G  24% /var/lib/docker/aufs
2017-09-25 21:09:47 (12202): Guest Log:               total        used        free      shared  buff/cache   available
2017-09-25 21:09:47 (12202): Guest Log: Mem:           3007          51        2266         651         689        2266
2017-09-25 21:09:47 (12202): Guest Log: Swap:           701           0         701
2017-09-25 21:09:47 (12202): Guest Log: Building apps directory...
2017-09-25 21:09:48 (12202): Guest Log: tar: ./r18/bin/main_predicts2d_mcr/.META/manifest.xml: time stamp 2035-10-29 06:32:22 is 570864153.967719095 s in the future
2017-09-25 21:09:51 (12202): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2017-09-25 21:09:59 (12202): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077_links.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2017-09-25 21:09:59 (12202): Guest Log: mv /root/shared/appsSource/rappture /root/shared/apps/share64/debian7/environ.d
2017-09-25 21:17:25 (12202): Guest Log: Prerun diagnostics...
2017-09-25 21:17:26 (12202): Guest Log: REPOSITORY                    TAG                 IMAGE ID            CREATED             SIZE
2017-09-25 21:17:26 (12202): Guest Log: nanohub_apps_share64_matlab   2                   a139d2f99d7b        4 weeks ago         476.6 MB
2017-09-25 21:17:26 (12202): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2017-09-25 21:17:26 (12202): Guest Log: 487.4M	/var/lib/docker
2017-09-25 21:17:26 (12202): Guest Log:               total        used        free      shared  buff/cache   available
2017-09-25 21:17:26 (12202): Guest Log: Mem:           3007          54        2227         651         725        2256
2017-09-25 21:17:26 (12202): Guest Log: Swap:           701           0         701
2017-09-25 21:17:26 (12202): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2017-09-25 21:17:26 (12202): Guest Log: tmpfs                     2.6G    651.5M      2.0G  24% /
2017-09-25 21:17:26 (12202): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2017-09-25 21:17:26 (12202): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2017-09-25 21:17:26 (12202): Guest Log: shared                  916.3G     77.8G    838.5G   8% /root/shared
2017-09-25 21:17:26 (12202): Guest Log: tmpfs                     2.6G    651.5M      2.0G  24% /var/lib/docker/aufs
2017-09-25 21:17:26 (12202): Guest Log: Running... 
2017-09-25 21:17:27 (12202): Guest Log: 00334135_01.boinc
2017-09-25 21:17:27 (12202): Guest Log: 00334135_01.sh
2017-09-25 21:19:41 (12202): Guest Log: boinc_app exited (0)
2017-09-25 21:19:41 (12202): Guest Log: Saving results...
2017-09-25 21:19:41 (12202): Guest Log: 00334135_01_output.tar.gz
2017-09-25 21:19:42 (12202): VM Completion File Detected.
2017-09-25 21:19:42 (12202): Powering off VM.
2017-09-25 21:19:47 (12202): Successfully stopped VM.
2017-09-25 21:19:47 (12202): Deregistering VM. (boinc_7a5ec2cd9aa816a1, slot#5)
2017-09-25 21:19:47 (12202): Removing network bandwidth throttle group from VM.
2017-09-25 21:19:48 (12202): Removing storage controller(s) from VM.
2017-09-25 21:19:48 (12202): Removing VM from VirtualBox.
2017-09-25 21:19:48 (12202): Removing virtual ISO 9660 disk from VirtualBox.
21:19:53 (12202): called boinc_finish(0)

</stderr_txt>
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