Task 5882
| Name | boinc2docker_10665_1506131074.589466_0_1 |
| Workunit | 2978 |
| Created | 23 Sep 2017, 9:48:47 UTC |
| Sent | 23 Sep 2017, 9:48:56 UTC |
| Report deadline | 23 Sep 2017, 17:48:56 UTC |
| Received | 23 Sep 2017, 9:59:30 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 6 |
| Run time | 3 min 34 sec |
| CPU time | 2 min 34 sec |
| Validate state | Valid |
| Credit | 1.04 |
| Device peak FLOPS | 2.24 GFLOPS |
| Application version | boinc2docker v1.11 (vbox64_mt) x86_64-pc-linux-gnu |
| Peak working set size | 93.65 MB |
| Peak swap size | 3.40 GB |
| Peak disk usage | 485.47 MB |
Stderr output
<core_client_version>7.4.23</core_client_version>
<![CDATA[
<stderr_txt>
2017-09-23 05:55:13 (13695): vboxwrapper (7.7.26197): starting
2017-09-23 05:55:13 (13695): Feature: Checkpoint interval offset (297 seconds)
2017-09-23 05:55:13 (13695): Detected: VirtualBox VboxManage Interface (Version: 5.1.8)
2017-09-23 05:55:13 (13695): Detected: Minimum checkpoint interval (600.000000 seconds)
2017-09-23 05:55:13 (13695): Create VM. (boinc_c246f2b33fd9dd18, slot#0)
2017-09-23 05:55:13 (13695): Updating drive controller type and model for desired configuration.
2017-09-23 05:55:26 (13695): Setting Memory Size for VM. (3072MB)
2017-09-23 05:55:26 (13695): Setting CPU Count for VM. (1)
2017-09-23 05:55:26 (13695): Setting Chipset Options for VM.
2017-09-23 05:55:26 (13695): Setting Boot Options for VM.
2017-09-23 05:55:26 (13695): Setting Network Configuration for NAT.
2017-09-23 05:55:26 (13695): Enabling VM Network Access.
2017-09-23 05:55:26 (13695): Disabling USB Support for VM.
2017-09-23 05:55:26 (13695): Disabling COM Port Support for VM.
2017-09-23 05:55:27 (13695): Disabling LPT Port Support for VM.
2017-09-23 05:55:27 (13695): Disabling Audio Support for VM.
2017-09-23 05:55:27 (13695): Disabling Clipboard Support for VM.
2017-09-23 05:55:27 (13695): Disabling Drag and Drop Support for VM.
2017-09-23 05:55:27 (13695): Adding storage controller(s) to VM.
2017-09-23 05:55:27 (13695): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2017-09-23 05:55:27 (13695): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2017-09-23 05:55:27 (13695): Enabling shared directory for VM.
2017-09-23 05:55:28 (13695): Starting VM. (boinc_c246f2b33fd9dd18, slot#0)
2017-09-23 05:55:29 (13695): Successfully started VM. (PID = '14959')
2017-09-23 05:55:29 (13695): Reporting VM Process ID to BOINC.
2017-09-23 05:55:29 (13695): Guest Log: BIOS: VirtualBox 5.1.8
2017-09-23 05:55:29 (13695): VM state change detected. (old = 'poweroff', new = 'running')
2017-09-23 05:55:29 (13695): Preference change detected
2017-09-23 05:55:29 (13695): Setting CPU throttle for VM. (75%)
2017-09-23 05:55:30 (13695): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2017-09-23 05:55:31 (13695): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2017-09-23 05:55:31 (13695): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2017-09-23 05:55:31 (13695): Guest Log: BIOS: Boot from Hard Disk 0 failed
2017-09-23 05:55:31 (13695): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2017-09-23 05:55:31 (13695): Guest Log: BIOS: Booting from CD-ROM...
2017-09-23 05:55:33 (13695): Guest Log: BIOS: KBD: unsupported int 16h function 03
2017-09-23 05:55:33 (13695): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000
2017-09-23 05:55:54 (13695): Guest Log: net.ipv4.ip_forward = 1
2017-09-23 05:55:54 (13695): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2017-09-23 05:55:54 (13695): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2017-09-23 05:55:54 (13695): Guest Log: sysctl: "cannot stat %s" is an unknown key
2017-09-23 05:55:54 (13695): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2017-09-23 05:55:54 (13695): Guest Log: Segmentation fault
2017-09-23 05:55:54 (13695): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2017-09-23 05:55:54 (13695): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2017-09-23 05:55:55 (13695): Guest Log: automount ...
2017-09-23 05:55:55 (13695): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2017-09-23 05:55:55 (13695): Guest Log: automount over.
2017-09-23 05:55:56 (13695): Guest Log: [1;32mSetting hostname to [1;35mboot2docker[0;39m [1;32mDone.[0;39m
2017-09-23 05:55:56 (13695): Guest Log: Sat Sep 23 05:55:54 UTC 2017 dhcp -------------------------------
2017-09-23 05:56:01 (13695): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2017-09-23 05:56:01 (13695): Guest Log: /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1287)
2017-09-23 05:56:02 (13695): Guest Log: /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1288)
2017-09-23 05:56:02 (13695): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1292)
2017-09-23 05:56:02 (13695): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1294)
2017-09-23 05:56:02 (13695): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6 (1295)
2017-09-23 05:56:02 (13695): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6/event5 (1296)
2017-09-23 05:56:02 (13695): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1297)
2017-09-23 05:56:02 (13695): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1298)
2017-09-23 05:56:02 (13695): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1299)
2017-09-23 05:56:02 (13695): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1300)
2017-09-23 05:56:02 (13695): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1301)
2017-09-23 05:56:02 (13695): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1302)
2017-09-23 05:56:02 (13695): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1303)
2017-09-23 05:56:02 (13695): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1304)
2017-09-23 05:56:02 (13695): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1305)
2017-09-23 05:56:02 (13695): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1307)
2017-09-23 05:56:02 (13695): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1308)
2017-09-23 05:56:02 (13695): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1309)
2017-09-23 05:56:02 (13695): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1310)
2017-09-23 05:56:02 (13695): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1311)
2017-09-23 05:56:02 (13695): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1312)
2017-09-23 05:56:02 (13695): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1313)
2017-09-23 05:56:02 (13695): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1314)
2017-09-23 05:56:02 (13695): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1315)
2017-09-23 05:56:02 (13695): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1317)
2017-09-23 05:56:03 (13695): Guest Log: Sat Sep 23 05:56:01 UTC 2017 dhcp -------------------------------
2017-09-23 05:56:03 (13695): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar 4 2016 17:38:55) release log
2017-09-23 05:56:03 (13695): Guest Log: 00:00:00.001101 main Log opened 2017-09-23T05:56:01.812961000Z
2017-09-23 05:56:03 (13695): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar 4 2016 17:38:55) release log
2017-09-23 05:56:03 (13695): Guest Log: 00:00:00.001101 main Log opened 2017-09-23T05:56:01.812961000Z
2017-09-23 05:56:03 (13695): Guest Log: 00:00:00.007482 main OS Product: Linux
2017-09-23 05:56:03 (13695): Guest Log: 00:00:00.007583 main OS Release: 4.1.19-boot2docker
2017-09-23 05:56:03 (13695): Guest Log: 00:00:00.007664 main OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2017-09-23 05:56:03 (13695): Guest Log: 00:00:00.007737 main Executable: /sbin/VBoxService
2017-09-23 05:56:03 (13695): Guest Log: 00:00:00.007739 main Process ID: 746
2017-09-23 05:56:03 (13695): Guest Log: 00:00:00.007740 main Package type: LINUX_64BITS_GENERIC
2017-09-23 05:56:03 (13695): Guest Log: 00:00:00.007482 main OS Product: Linux
2017-09-23 05:56:03 (13695): Guest Log: 00:00:00.007583 main OS Release: 4.1.19-boot2docker
2017-09-23 05:56:03 (13695): Guest Log: 00:00:00.007664 main OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2017-09-23 05:56:03 (13695): Guest Log: 00:00:00.007737 main Executable: /sbin/VBoxService
2017-09-23 05:56:03 (13695): Guest Log: 00:00:00.007739 main Process ID: 746
2017-09-23 05:56:03 (13695): Guest Log: 00:00:00.007740 main Package type: LINUX_64BITS_GENERIC
2017-09-23 05:56:03 (13695): Guest Log: 00:00:00.049952 main 5.0.16 r105871 started. Verbose level = 0
2017-09-23 05:56:03 (13695): Guest Log: 00:00:00.049952 main 5.0.16 r105871 started. Verbose level = 0
2017-09-23 05:56:03 (13695): Guest Log: 00:00:00.076589 vminfo rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2017-09-23 05:56:03 (13695): Guest Log: 00:00:00.076794 vminfo Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2017-09-23 05:56:04 (13695): Guest Log: Mounting BOINC shared/...
2017-09-23 05:56:04 (13695): Guest Log: -------------------
2017-09-23 05:56:04 (13695): Guest Log: Sat Sep 23 09:56:04 UTC 2017
2017-09-23 05:56:09 (13695): Guest Log: 00:00:05.086584 vminfo Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2017-09-23 05:56:09 (13695): Guest Log: Sat Sep 23 09:56:09 UTC 2017
2017-09-23 05:56:09 (13695): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default
2017-09-23 05:56:09 (13695): Guest Log: link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2017-09-23 05:56:09 (13695): Guest Log: inet 127.0.0.1/8 scope host lo
2017-09-23 05:56:09 (13695): Guest Log: valid_lft forever preferred_lft forever
2017-09-23 05:56:09 (13695): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default
2017-09-23 05:56:09 (13695): Guest Log: link/ether 9e:6f:f5:c0:48:ec brd ff:ff:ff:ff:ff:ff
2017-09-23 05:56:09 (13695): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2017-09-23 05:56:09 (13695): Guest Log: link/ether 08:00:27:3a:ea:74 brd ff:ff:ff:ff:ff:ff
2017-09-23 05:56:09 (13695): Guest Log: inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2017-09-23 05:56:09 (13695): Guest Log: valid_lft forever preferred_lft forever
2017-09-23 05:56:09 (13695): Guest Log: -------------------
2017-09-23 05:56:09 (13695): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2017-09-23 05:56:09 (13695): Guest Log: Waiting for Docker daemon to start...
2017-09-23 05:56:12 (13695): Guest Log: REPOSITORY TAG IMAGE ID CREATED SIZE
2017-09-23 05:56:12 (13695): Guest Log: Running boinc_app...
2017-09-23 05:56:12 (13695): Guest Log: Importing Docker image from BOINC...
2017-09-23 05:56:12 (13695): Guest Log: Filesystem Size Used Available Use% Mounted on
2017-09-23 05:56:12 (13695): Guest Log: tmpfs 2.6G 164.1M 2.5G 6% /
2017-09-23 05:56:12 (13695): Guest Log: tmpfs 1.5G 0 1.5G 0% /dev/shm
2017-09-23 05:56:12 (13695): Guest Log: cgroup 1.5G 0 1.5G 0% /sys/fs/cgroup
2017-09-23 05:56:12 (13695): Guest Log: shared 916.3G 73.5G 842.8G 8% /root/shared
2017-09-23 05:56:12 (13695): Guest Log: tmpfs 2.6G 164.1M 2.5G 6% /var/lib/docker/aufs
2017-09-23 05:56:13 (13695): Guest Log: 00:00:10.090937 vminfo Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2017-09-23 05:56:30 (13695): Guest Log: doing docker load...
2017-09-23 05:56:53 (13695): Guest Log: Filesystem Size Used Available Use% Mounted on
2017-09-23 05:56:53 (13695): Guest Log: tmpfs 2.6G 651.5M 2.0G 24% /
2017-09-23 05:56:53 (13695): Guest Log: tmpfs 1.5G 0 1.5G 0% /dev/shm
2017-09-23 05:56:53 (13695): Guest Log: cgroup 1.5G 0 1.5G 0% /sys/fs/cgroup
2017-09-23 05:56:53 (13695): Guest Log: shared 916.3G 73.4G 842.9G 8% /root/shared
2017-09-23 05:56:53 (13695): Guest Log: tmpfs 2.6G 651.5M 2.0G 24% /var/lib/docker/aufs
2017-09-23 05:56:53 (13695): Guest Log: total used free shared buff/cache available
2017-09-23 05:56:53 (13695): Guest Log: Mem: 3007 51 2266 651 689 2266
2017-09-23 05:56:53 (13695): Guest Log: Swap: 702 0 702
2017-09-23 05:56:53 (13695): Guest Log: Building apps directory...
2017-09-23 05:56:58 (13695): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2017-09-23 05:57:05 (13695): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077_links.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2017-09-23 05:57:05 (13695): Guest Log: mv /root/shared/appsSource/rappture /root/shared/apps/share64/debian7/environ.d
2017-09-23 05:58:53 (13695): Guest Log: Prerun diagnostics...
2017-09-23 05:58:53 (13695): Guest Log: REPOSITORY TAG IMAGE ID CREATED SIZE
2017-09-23 05:58:53 (13695): Guest Log: nanohub_apps_share64_matlab 2 a139d2f99d7b 3 weeks ago 476.6 MB
2017-09-23 05:58:53 (13695): Guest Log: CONTAINER ID IMAGE COMMAND CREATED STATUS PORTS NAMES
2017-09-23 05:58:53 (13695): Guest Log: 487.4M /var/lib/docker
2017-09-23 05:58:53 (13695): Guest Log: total used free shared buff/cache available
2017-09-23 05:58:53 (13695): Guest Log: Mem: 3007 54 2251 651 701 2261
2017-09-23 05:58:53 (13695): Guest Log: Swap: 702 0 702
2017-09-23 05:58:53 (13695): Guest Log: Filesystem Size Used Available Use% Mounted on
2017-09-23 05:58:53 (13695): Guest Log: tmpfs 2.6G 651.5M 2.0G 24% /
2017-09-23 05:58:53 (13695): Guest Log: tmpfs 1.5G 0 1.5G 0% /dev/shm
2017-09-23 05:58:53 (13695): Guest Log: cgroup 1.5G 0 1.5G 0% /sys/fs/cgroup
2017-09-23 05:58:53 (13695): Guest Log: shared 916.3G 72.2G 844.1G 8% /root/shared
2017-09-23 05:58:53 (13695): Guest Log: tmpfs 2.6G 651.5M 2.0G 24% /var/lib/docker/aufs
2017-09-23 05:58:53 (13695): Guest Log: Running...
2017-09-23 05:58:54 (13695): Guest Log: 00333654_01.boinc
2017-09-23 05:58:54 (13695): Guest Log: 00333654_01.sh
2017-09-23 05:59:13 (13695): Guest Log: boinc_app exited (0)
2017-09-23 05:59:13 (13695): Guest Log: Saving results...
2017-09-23 05:59:13 (13695): Guest Log: 00333654_01_output.tar.gz
2017-09-23 05:59:13 (13695): VM Completion File Detected.
2017-09-23 05:59:13 (13695): Powering off VM.
2017-09-23 05:59:13 (13695): Successfully stopped VM.
2017-09-23 05:59:13 (13695): Deregistering VM. (boinc_c246f2b33fd9dd18, slot#0)
2017-09-23 05:59:13 (13695): Removing network bandwidth throttle group from VM.
2017-09-23 05:59:13 (13695): Removing storage controller(s) from VM.
2017-09-23 05:59:14 (13695): Removing VM from VirtualBox.
2017-09-23 05:59:14 (13695): Removing virtual ISO 9660 disk from VirtualBox.
05:59:19 (13695): called boinc_finish(0)
</stderr_txt>
]]>
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