Task 5858

Name boinc2docker_28563_1506128464.235089_0_1
Workunit 2974
Created 23 Sep 2017, 9:20:40 UTC
Sent 23 Sep 2017, 9:21:35 UTC
Report deadline 23 Sep 2017, 17:21:35 UTC
Received 23 Sep 2017, 9:36:46 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 6
Run time 7 min 43 sec
CPU time 2 min 37 sec
Validate state Valid
Credit 2.19
Device peak FLOPS 2.24 GFLOPS
Application version boinc2docker v1.11 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 93.79 MB
Peak swap size 3.40 GB
Peak disk usage 1.55 GB

Stderr output

<core_client_version>7.4.23</core_client_version>
<![CDATA[
<stderr_txt>
2017-09-23 05:27:59 (24059): vboxwrapper (7.7.26197): starting
2017-09-23 05:27:59 (24059): Feature: Checkpoint interval offset (142 seconds)
2017-09-23 05:27:59 (24059): Detected: VirtualBox VboxManage Interface (Version: 5.1.8)
2017-09-23 05:27:59 (24059): Detected: Minimum checkpoint interval (600.000000 seconds)
2017-09-23 05:27:59 (24059): Create VM. (boinc_f5fac2a89c450a16, slot#2)
2017-09-23 05:27:59 (24059): Updating drive controller type and model for desired configuration.
2017-09-23 05:28:21 (24059): Setting Memory Size for VM. (3072MB)
2017-09-23 05:28:26 (24059): Setting CPU Count for VM. (1)
2017-09-23 05:28:27 (24059): Setting Chipset Options for VM.
2017-09-23 05:28:27 (24059): Setting Boot Options for VM.
2017-09-23 05:28:27 (24059): Setting Network Configuration for NAT.
2017-09-23 05:28:27 (24059): Enabling VM Network Access.
2017-09-23 05:28:27 (24059): Disabling USB Support for VM.
2017-09-23 05:28:27 (24059): Disabling COM Port Support for VM.
2017-09-23 05:28:27 (24059): Disabling LPT Port Support for VM.
2017-09-23 05:28:27 (24059): Disabling Audio Support for VM.
2017-09-23 05:28:27 (24059): Disabling Clipboard Support for VM.
2017-09-23 05:28:27 (24059): Disabling Drag and Drop Support for VM.
2017-09-23 05:28:27 (24059): Adding storage controller(s) to VM.
2017-09-23 05:28:27 (24059): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2017-09-23 05:28:27 (24059): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2017-09-23 05:28:27 (24059): Enabling shared directory for VM.
2017-09-23 05:28:28 (24059): Starting VM. (boinc_f5fac2a89c450a16, slot#2)
2017-09-23 05:28:29 (24059): Successfully started VM. (PID = '25599')
2017-09-23 05:28:29 (24059): Reporting VM Process ID to BOINC.
2017-09-23 05:28:29 (24059): Guest Log: BIOS: VirtualBox 5.1.8
2017-09-23 05:28:29 (24059): VM state change detected. (old = 'poweroff', new = 'running')
2017-09-23 05:28:29 (24059): Preference change detected
2017-09-23 05:28:29 (24059): Setting CPU throttle for VM. (75%)
2017-09-23 05:28:30 (24059): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2017-09-23 05:28:32 (24059): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2017-09-23 05:28:32 (24059): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2017-09-23 05:28:32 (24059): Guest Log: BIOS: Boot from Hard Disk 0 failed
2017-09-23 05:28:32 (24059): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2017-09-23 05:28:32 (24059): Guest Log: BIOS: Booting from CD-ROM...
2017-09-23 05:28:33 (24059): Guest Log: BIOS: KBD: unsupported int 16h function 03
2017-09-23 05:28:33 (24059): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2017-09-23 05:28:51 (24059): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2017-09-23 05:28:51 (24059): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2017-09-23 05:28:55 (24059): Guest Log: net.ipv4.ip_forward = 1
2017-09-23 05:28:55 (24059): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2017-09-23 05:28:55 (24059): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2017-09-23 05:28:55 (24059): Guest Log: sysctl: "cannot stat %s" is an unknown key
2017-09-23 05:28:55 (24059): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2017-09-23 05:28:55 (24059): Guest Log: Segmentation fault
2017-09-23 05:28:56 (24059): Guest Log: automount ...
2017-09-23 05:29:00 (24059): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2017-09-23 05:29:01 (24059): Guest Log: automount over.
2017-09-23 05:29:02 (24059): Guest Log: Setting hostname to boot2docker Done.
2017-09-23 05:29:02 (24059): Guest Log: Sat Sep 23 05:28:59 UTC 2017 dhcp -------------------------------
2017-09-23 05:29:06 (24059): Guest Log: Sat Sep 23 05:29:04 UTC 2017 dhcp -------------------------------
2017-09-23 05:29:07 (24059): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2017-09-23 05:29:07 (24059): Guest Log: 00:00:00.000685 main     Log opened 2017-09-23T05:29:04.780852000Z
2017-09-23 05:29:07 (24059): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2017-09-23 05:29:07 (24059): Guest Log: 00:00:00.000685 main     Log opened 2017-09-23T05:29:04.780852000Z
2017-09-23 05:29:07 (24059): Guest Log: 00:00:00.006729 main     OS Product: Linux
2017-09-23 05:29:07 (24059): Guest Log: 00:00:00.006811 main     OS Release: 4.1.19-boot2docker
2017-09-23 05:29:07 (24059): Guest Log: 00:00:00.006900 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2017-09-23 05:29:07 (24059): Guest Log: 00:00:00.006959 main     Executable: /sbin/VBoxService
2017-09-23 05:29:07 (24059): Guest Log: 00:00:00.006961 main     Process ID: 741
2017-09-23 05:29:07 (24059): Guest Log: 00:00:00.006962 main     Package type: LINUX_64BITS_GENERIC
2017-09-23 05:29:07 (24059): Guest Log: 00:00:00.006729 main     OS Product: Linux
2017-09-23 05:29:07 (24059): Guest Log: 00:00:00.009964 main     5.0.16 r105871 started. Verbose level = 0
2017-09-23 05:29:07 (24059): Guest Log: 00:00:00.006811 main     OS Release: 4.1.19-boot2docker
2017-09-23 05:29:07 (24059): Guest Log: 00:00:00.069028 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2017-09-23 05:29:07 (24059): Guest Log: 00:00:00.069146 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2017-09-23 05:29:07 (24059): Guest Log: 00:00:00.006900 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2017-09-23 05:29:07 (24059): Guest Log: 00:00:00.006959 main     Executable: /sbin/VBoxService
2017-09-23 05:29:07 (24059): Guest Log: 00:00:00.006961 main     Process ID: 741
2017-09-23 05:29:07 (24059): Guest Log: 00:00:00.006962 main     Package type: LINUX_64BITS_GENERIC
2017-09-23 05:29:07 (24059): Guest Log: 00:00:00.009964 main     5.0.16 r105871 started. Verbose level = 0
2017-09-23 05:29:07 (24059): Guest Log: Mounting BOINC shared/...
2017-09-23 05:29:07 (24059): Guest Log: -------------------
2017-09-23 05:29:07 (24059): Guest Log: Sat Sep 23 09:29:07 UTC 2017
2017-09-23 05:29:12 (24059): Guest Log: 00:00:05.070302 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2017-09-23 05:29:12 (24059): Guest Log: Sat Sep 23 09:29:12 UTC 2017
2017-09-23 05:29:12 (24059): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2017-09-23 05:29:12 (24059): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2017-09-23 05:29:12 (24059): Guest Log:     inet 127.0.0.1/8 scope host lo
2017-09-23 05:29:12 (24059): Guest Log:        valid_lft forever preferred_lft forever
2017-09-23 05:29:12 (24059): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2017-09-23 05:29:12 (24059): Guest Log:     link/ether 3a:88:b1:4b:71:ae brd ff:ff:ff:ff:ff:ff
2017-09-23 05:29:12 (24059): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2017-09-23 05:29:12 (24059): Guest Log:     link/ether 08:00:27:89:bf:41 brd ff:ff:ff:ff:ff:ff
2017-09-23 05:29:12 (24059): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2017-09-23 05:29:12 (24059): Guest Log:        valid_lft forever preferred_lft forever
2017-09-23 05:29:12 (24059): Guest Log: -------------------
2017-09-23 05:29:12 (24059): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2017-09-23 05:29:12 (24059): Guest Log: Waiting for Docker daemon to start...
2017-09-23 05:29:15 (24059): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2017-09-23 05:29:15 (24059): Guest Log: Running boinc_app...
2017-09-23 05:29:15 (24059): Guest Log: Importing Docker image from BOINC...
2017-09-23 05:29:15 (24059): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2017-09-23 05:29:15 (24059): Guest Log: tmpfs                     2.6G    164.1M      2.5G   6% /
2017-09-23 05:29:15 (24059): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2017-09-23 05:29:15 (24059): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2017-09-23 05:29:15 (24059): Guest Log: shared                  916.3G     73.6G    842.6G   8% /root/shared
2017-09-23 05:29:15 (24059): Guest Log: tmpfs                     2.6G    164.1M      2.5G   6% /var/lib/docker/aufs
2017-09-23 05:29:17 (24059): Guest Log: 00:00:10.073781 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2017-09-23 05:29:33 (24059): Guest Log: doing docker load...
2017-09-23 05:29:55 (24059): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2017-09-23 05:29:55 (24059): Guest Log: tmpfs                     2.6G    651.5M      2.0G  24% /
2017-09-23 05:29:55 (24059): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2017-09-23 05:29:55 (24059): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2017-09-23 05:29:55 (24059): Guest Log: shared                  916.3G     74.5G    841.8G   8% /root/shared
2017-09-23 05:29:55 (24059): Guest Log: tmpfs                     2.6G    651.5M      2.0G  24% /var/lib/docker/aufs
2017-09-23 05:29:55 (24059): Guest Log:               total        used        free      shared  buff/cache   available
2017-09-23 05:29:55 (24059): Guest Log: Mem:           3007          53        2264         651         689        2264
2017-09-23 05:29:55 (24059): Guest Log: Swap:           702           0         702
2017-09-23 05:29:55 (24059): Guest Log: Building apps directory...
2017-09-23 05:30:02 (24059): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2017-09-23 05:30:11 (24059): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077_links.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2017-09-23 05:30:11 (24059): Guest Log: mv /root/shared/appsSource/rappture /root/shared/apps/share64/debian7/environ.d
2017-09-23 05:35:56 (24059): Guest Log: Prerun diagnostics...
2017-09-23 05:35:57 (24059): Guest Log: REPOSITORY                    TAG                 IMAGE ID            CREATED             SIZE
2017-09-23 05:35:57 (24059): Guest Log: nanohub_apps_share64_matlab   2                   a139d2f99d7b        3 weeks ago         476.6 MB
2017-09-23 05:35:57 (24059): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2017-09-23 05:35:57 (24059): Guest Log: 487.4M	/var/lib/docker
2017-09-23 05:35:57 (24059): Guest Log:               total        used        free      shared  buff/cache   available
2017-09-23 05:35:57 (24059): Guest Log: Mem:           3007          55        2250         651         701        2260
2017-09-23 05:35:57 (24059): Guest Log: Swap:           702           0         702
2017-09-23 05:35:57 (24059): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2017-09-23 05:35:57 (24059): Guest Log: tmpfs                     2.6G    651.5M      2.0G  24% /
2017-09-23 05:35:57 (24059): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2017-09-23 05:35:57 (24059): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2017-09-23 05:35:57 (24059): Guest Log: shared                  916.3G     78.0G    838.3G   9% /root/shared
2017-09-23 05:35:57 (24059): Guest Log: tmpfs                     2.6G    651.5M      2.0G  24% /var/lib/docker/aufs
2017-09-23 05:35:57 (24059): Guest Log: Running... 
2017-09-23 05:35:58 (24059): Guest Log: 00333643_01.boinc
2017-09-23 05:35:58 (24059): Guest Log: 00333643_01.sh
2017-09-23 05:36:31 (24059): Guest Log: boinc_app exited (0)
2017-09-23 05:36:31 (24059): Guest Log: Saving results...
2017-09-23 05:36:31 (24059): Guest Log: 00333643_01_output.tar.gz
2017-09-23 05:36:31 (24059): VM Completion File Detected.
2017-09-23 05:36:31 (24059): Powering off VM.
2017-09-23 05:36:32 (24059): Successfully stopped VM.
2017-09-23 05:36:32 (24059): Deregistering VM. (boinc_f5fac2a89c450a16, slot#2)
2017-09-23 05:36:32 (24059): Removing network bandwidth throttle group from VM.
2017-09-23 05:36:32 (24059): Removing storage controller(s) from VM.
2017-09-23 05:36:33 (24059): Removing VM from VirtualBox.
2017-09-23 05:36:33 (24059): Removing virtual ISO 9660 disk from VirtualBox.
05:36:38 (24059): called boinc_finish(0)

</stderr_txt>
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